RNA id: TCONS_00030008


Basic Information

Item Value
RNA id TCONS_00030008
length 4097
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_014202
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37494319 ~ 37498679 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagtgattttatgttttagaatagaattagtaatgttctcaataatatctgtaaaggaaacacaggccctatatgtgccattaacatacatttcaattaatatgTAAAACGAGTGAATGATTTAACCAAAACTGATATTGGattttatgttaaatacttgtttgtataaaacaatataatttgcacgagggaattatggggttcttctctaaagaagtttttACTACCCTGttaagagcatcattatgggagttttacgttataactaacatggttcaaacgatggatctgcgaaaGTGAAACTaagggttttgggaaacactcatcactacatcgttcttttcccaaacgatgcatcgtactatgatagttcagccgcgtgTTACGTCGTTGTttaggaaacgcacccctggttagTAGTCTCTagaagtcttgaacaccttgattagttggatcagatgtgcttgattagagttggagaacaactgtgcagagctgcggccctccaggaatggggtatatgcacactgacttttaatttcagtcagctaGCCCCGGGGCTTCtagttaattgtcatcccatacaaaatcgccTTGtctaagatctgatttctttcaaaaaaaaaaaaacagtaatcttccctgcctggctgagatacaatgtaaagtgggtctcagaccaaacAAATAGTATTCGATTTATTTATTCGATCCATGTCTTTGAAAAATggaaattaattagttaattaattaattacctcAATATTTTCTCAGAGTttttgcgctagcctgctgctaatgaagGCACCTTTATTTAAACAGTCTTTCGTCTCTTTTTACGATTTACCAAAaaaaatggatgcttaagtctatttaattgattatttttgaaTTATATCACAAAATTGATgctttaaaaggaaccttacGAAATtgacaaaggctcattctgaaaaaaaagcccaataaacatttctggagatggtGAATTCTTTAGCCAGAATTAAGTATGGctgcactacatttttttaaatgaacagggtggtatgacgcctTTCCTTTTCTCTTACCTCTGTATAGACGGCTTTCTGGCTGTTACCAGtatgtccagttagctcaccatgtacgtcgctagacttcagatgcagagaggagttgaccatgacaacgcAGTATGATTCCGGTGAAGAACGATTTTAGAAAGTGGgtcagaccaaaaaaaaaaaaaaaaaaatcagccctTGCAAAAAATCAGgcaagagcttttctttttctgaattgctttttaaaatttgtcGGTTGAGTTTAGGCGAGGAGGAGGCTGGGTCAGTCGattgatcagtcagtcattcagtcagtcaaacagtcagtcgacagcggcctctggtggattcgcgaaaaacaaaaactgcaaaaaaacaaaagtcctgggacgtatttagcactctccagaaatgtatgcacacaggtacgttttcagaatgcaCCTGGGttaaaaattgaaaatagtcacataaagctttcaccagaggtttatcattggctgaaaaacactagctgtgcatataacccactGAGTTTGAGATTTGTGTTATACCGTCAGTTAACTATTTATAAAGAAAATGTGTTAGATTAGGTGGTCAAGTTTTCTGTATTCATCAAAAGGAAGCATTAACATATAATTATGGGATTGGAGGAATGTTTGTGTGCATCCAACTTTTAACTTGGATGAATTCAAACTATAAAGAAGCATTCTTACAAACTCTCGAGATcatattttcttttccttttttttttttttttttgtttttaagtaaaaCATTTTGATTGCATGAACGAGTTTGTTTTGTTCTGGGTATGTTTAACCATGAAATGAGATGGGAAATATTTTATTGAGAGATGTATATTTTATAAAGTACATTTTTAGATTAGCAGATGAACATATGTTGTCAAAAGTggtgttaaaacatgttataaaaGTGTCTAAGAATTTACAATTTAGGCAGTGTCAGCTGTGTGGACTTAACCGAAGACTTCACCTCTGCAGAAGCGTGTTCCTCTCATTTTTTTTGTCGATCTTGAAACAGACTGGCTAAAGACTTTTGACAAAAAAGACGGTTGATAGCCGCTTGCCATGTTGTCCACAGGCAAAAAATATAACCTGTTTTCTATGTCTTGACTATTTACACGTGCCTAACAGCACTAAGTGTGGCTTTTTTATCTAACCATTCAGTATTATATTCAATATGAGATATATAACTCACAAAATAtgtattgttcaaactatttgaTTTGTTACAGCTAATAACCACCTCACTCTGGATGTTTCTATGTAACCTGCATGCTTTTATTAATCcatggaagaagaaaaaaactataaaagCCGTAGATCTTTATTCCctgtctgaaagaaaaaaaagcAAGTCTAAGATGACCGAAAAGCACAACAGACTATTTCCTCTTCCACTGTGAAGGACTTCCTGCCTTCTCAAATCACTGAAAGACTATGAACTACATGCTGTTGGAGGTTCCAGTGTGGAAAAATAGGATGATCTCTTATCAGGGCCATTTGATTTTGATATACCAACGAAACATCAAGCAAGACTGATCACATTTTTCCCCACCAAGTTGCTTGCCTTCTCGGGCACATACCAGAAATAAGACACTCAAATGAACTATTTTGATGGCCTTTCTATCTTGACCAACATTTTCCAGAATATTGAAGGATCAAATACAATATTAATGGCTGTGTCTCTACATCATGTAAAGATTCCCTTGTCAACATGTCGCTTATTGAGACATTTCGTGTCTGAATAGGTAGGAATGGATGGCGAAACACTTGCTTTGAAAACTGGAGTCTTAAAAAAGTGTTGGCGAAGCCTCTGTATATGCCGTACACAGTTTTAGCTAgactaaattataaatatttctccGTAGCACAAAGGAGCTTGTAGCAGTGTGACGTAGACTTTACGTTGGTTTCTATACCACATTATTGATCACTGGAAATTACATGGGTCATAGACTTACAAACAATTACTGTGTAATTACAAATACCTTCTCACGTTCCGTTGTATTATGTACAGTAAATATATCTtgaagttgttattattaatattcaatgGATTGTTATGACGATTACTGGTATTATTAATGATTTCATATATAAtggagaagaaaaaaagtgttgccATTATGATTATGAGAAGTCTGTATTCTCCAGGGTGTTTGTGTGTAAAGAGCCACCCGATTTAGATCTATTCTTTTGTTCGTAATTGCTGCTAATGTAGAAGATATACCAGTGGAAGACGGTAGAAGACAAATTTACAGCTAATGTTAGGCCCATCTCCTCTAGAAGTTGTGTGCAGATTTTCACATGACAGAAAACGTCCAATGAACAACAAGGAGTGAGTATATGTCcctctttaaatagaaaaatatatatgtttataaatgtttgaGCAGTTTGTGATGTAGCAAAAACCTTTTTTGTTCTTTAAATGTTCATTAAGTTGCTCATAACACTGCATTTTAGGAACATTGtggacattttaattattaacgtTATCACTGTTTATGGTTGttgtattttttctttgcttGTTTTTCTAATCACATATTTATGTTTGATACAGTGCCAAGGTATTTTGTATCTAtgctttttacattgttttaccaAACTGCAATAGCTTACGACATCTTCACCATTTTCAATATTATTTCCAGATTTGAAATAAATCTGAATCTCTTGCCAGTTTGTTGAAACAAAAGGATGCAAGCCTTATAAATAATAATGGCACAGATGAAGCATACGTTGATCATGTTTATTTGGTCTCTCGCCACTGATGTACAGCTCAATGTCTACTAGAATTAAATCAGAGAGATGGCACACTGTGATGTGGTAAACCTAAACACAGAATGTAATATTGTCAACGGTTgtaaacattttctaaaaattaCTATAAAGCTATTTTAGCAAGGTACAATAACTGCTGTCCGCTTTTAGTGTTCTGTTCTGCTCCTTTTCTTAACAATACGTTCATTAATTGAACTCTGTGTTTTCCATTaaccttttgaaaaacaaaatgtccTCACAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030007 lncRNA upstream 866685 36625129 ~ 36627634 (+) False XLOC_014196
TCONS_00028241 lncRNA upstream 866685 36625275 ~ 36627634 (+) False XLOC_014196
TCONS_00028242 lncRNA upstream 866685 36625686 ~ 36627634 (+) True XLOC_014196
TCONS_00030006 lncRNA upstream 914481 36578914 ~ 36579838 (+) True XLOC_014195
TCONS_00030005 lncRNA upstream 1378478 36110942 ~ 36115841 (+) True XLOC_014192
TCONS_00030009 lncRNA downstream 70982 37569661 ~ 37570676 (+) True XLOC_014204
TCONS_00029728 lncRNA downstream 439128 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030010 lncRNA downstream 518920 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00030011 lncRNA downstream 879720 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030012 lncRNA downstream 956955 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00028247 mRNA upstream 1802 37458610 ~ 37492517 (+) True XLOC_014201
TCONS_00028246 mRNA upstream 354867 37135700 ~ 37139452 (+) True XLOC_014200
TCONS_00028245 mRNA upstream 360108 37120491 ~ 37134211 (+) True XLOC_014199
TCONS_00028244 mRNA upstream 374428 37118547 ~ 37119891 (+) True XLOC_014198
TCONS_00028238 mRNA upstream 1641929 35799384 ~ 35852390 (+) True XLOC_014190
TCONS_00028248 mRNA downstream 10959 37509638 ~ 37519610 (+) True XLOC_014203
TCONS_00028249 mRNA downstream 121663 37620342 ~ 37842003 (+) False XLOC_014205
TCONS_00028251 mRNA downstream 202771 37701450 ~ 37842003 (+) True XLOC_014205
TCONS_00028253 mRNA downstream 350151 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028252 mRNA downstream 350151 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028243 other upstream 814112 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028240 other upstream 1251411 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 1291124 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028237 other upstream 1715362 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028229 other upstream 2747586 34742706 ~ 34746733 (+) False XLOC_014179
TCONS_00028250 other downstream 170981 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028259 other downstream 757597 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028260 other downstream 923380 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028262 other downstream 965452 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028264 other downstream 1449893 38948572 ~ 38948686 (+) True XLOC_014217

Expression Profile

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