Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028229 |
| length | 819 |
| RNA type | processed_transcript |
| GC content | 0.38 |
| exon number | 5 |
| gene id | XLOC_014179 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 34742706 ~ 34746878 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048813 | dendrite morphogenesis | biological_process |
| GO:0051489 | regulation of filopodium assembly | biological_process |
| GO:0030833 | regulation of actin filament polymerization | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0030425 | dendrite | cellular_component |
| GO:0030426 | growth cone | cellular_component |
| GO:0032433 | filopodium tip | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003785 | actin monomer binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-602 | Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to be involved in dendrite morphogenesis; regulation of actin filament polymerization; and regulation of filopodium assembly. Predicted to be located in growth cone. Predicted to be active in several cellular components, including dendrite; filopodium tip; and lamellipodium. Orthologous to human ABITRAM (actin binding transcription modulator). |
| ensembl_id | ENSDART00000146777 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029977 | lncRNA | upstream | 4341 | 34701677 ~ 34738365 (+) | True | XLOC_014178 |
| TCONS_00029976 | lncRNA | upstream | 460728 | 34280764 ~ 34281978 (+) | True | XLOC_014176 |
| TCONS_00029975 | lncRNA | upstream | 944296 | 33795748 ~ 33798410 (+) | True | XLOC_014169 |
| TCONS_00029973 | lncRNA | upstream | 1052346 | 33553634 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029974 | lncRNA | upstream | 1052346 | 33574314 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029978 | lncRNA | downstream | 2305 | 34749038 ~ 34751777 (+) | True | XLOC_014180 |
| TCONS_00029979 | lncRNA | downstream | 140842 | 34887575 ~ 34914799 (+) | True | XLOC_014181 |
| TCONS_00029980 | lncRNA | downstream | 614747 | 35361480 ~ 35363590 (+) | True | XLOC_014185 |
| TCONS_00028236 | lncRNA | downstream | 621869 | 35368602 ~ 35369837 (+) | True | XLOC_014186 |
| TCONS_00029981 | lncRNA | downstream | 626800 | 35373533 ~ 35378466 (+) | False | XLOC_014187 |
| TCONS_00028228 | mRNA | upstream | 62968 | 34311374 ~ 34679738 (+) | True | XLOC_014177 |
| TCONS_00028227 | mRNA | upstream | 463533 | 34274504 ~ 34279173 (+) | True | XLOC_014175 |
| TCONS_00028226 | mRNA | upstream | 483040 | 34230108 ~ 34259666 (+) | True | XLOC_014174 |
| TCONS_00028223 | mRNA | upstream | 524550 | 34169055 ~ 34218156 (+) | False | XLOC_014172 |
| TCONS_00028224 | mRNA | upstream | 525342 | 34180327 ~ 34217364 (+) | True | XLOC_014172 |
| TCONS_00028231 | mRNA | downstream | 203467 | 34950200 ~ 34958185 (+) | False | XLOC_014182 |
| TCONS_00028232 | mRNA | downstream | 205849 | 34952582 ~ 34957888 (+) | True | XLOC_014182 |
| TCONS_00028233 | mRNA | downstream | 255746 | 35002479 ~ 35004947 (+) | True | XLOC_014183 |
| TCONS_00028234 | mRNA | downstream | 266396 | 35013129 ~ 35017047 (+) | False | XLOC_014184 |
| TCONS_00028235 | mRNA | downstream | 266479 | 35013212 ~ 35016295 (+) | True | XLOC_014184 |
| TCONS_00028225 | other | upstream | 535426 | 34207162 ~ 34207280 (+) | True | XLOC_014173 |
| TCONS_00028221 | other | upstream | 607011 | 34135607 ~ 34135695 (+) | True | XLOC_014171 |
| TCONS_00028217 | other | upstream | 976981 | 33732162 ~ 33765725 (+) | False | XLOC_014168 |
| TCONS_00028194 | other | upstream | 1924132 | 32814320 ~ 32818574 (+) | True | XLOC_014160 |
| TCONS_00028183 | other | upstream | 2684107 | 32058477 ~ 32058599 (+) | True | XLOC_014151 |
| TCONS_00028237 | other | downstream | 1032109 | 35778842 ~ 35778957 (+) | True | XLOC_014189 |
| TCONS_00028239 | other | downstream | 1456345 | 36203078 ~ 36203195 (+) | True | XLOC_014193 |
| TCONS_00028240 | other | downstream | 1496058 | 36242791 ~ 36242908 (+) | True | XLOC_014194 |
| TCONS_00028243 | other | downstream | 1933358 | 36680091 ~ 36680207 (+) | True | XLOC_014197 |
| TCONS_00028250 | other | downstream | 2922927 | 37669660 ~ 37669774 (+) | True | XLOC_014206 |
