Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028227 |
| length | 560 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 2 |
| gene id | XLOC_014175 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 34274504 ~ 34279173 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | description |
|---|---|
| ZDB-GENE-060503-800 | Orthologous to human SPATA46 (spermatogenesis associated 46). |
| ensembl_id | ENSDART00000132046 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00029975 | lncRNA | upstream | 476094 | 33795748 ~ 33798410 (+) | True | XLOC_014169 |
| TCONS_00029973 | lncRNA | upstream | 584144 | 33553634 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029974 | lncRNA | upstream | 584144 | 33574314 ~ 33690360 (+) | False | XLOC_014168 |
| TCONS_00029972 | lncRNA | upstream | 613568 | 33553613 ~ 33660936 (+) | False | XLOC_014168 |
| TCONS_00028211 | lncRNA | upstream | 797029 | 33464709 ~ 33477475 (+) | False | XLOC_014167 |
| TCONS_00029976 | lncRNA | downstream | 1591 | 34280764 ~ 34281978 (+) | True | XLOC_014176 |
| TCONS_00029977 | lncRNA | downstream | 422504 | 34701677 ~ 34738365 (+) | True | XLOC_014178 |
| TCONS_00029978 | lncRNA | downstream | 469865 | 34749038 ~ 34751777 (+) | True | XLOC_014180 |
| TCONS_00029979 | lncRNA | downstream | 608402 | 34887575 ~ 34914799 (+) | True | XLOC_014181 |
| TCONS_00029980 | lncRNA | downstream | 1082307 | 35361480 ~ 35363590 (+) | True | XLOC_014185 |
| TCONS_00028226 | mRNA | upstream | 14838 | 34230108 ~ 34259666 (+) | True | XLOC_014174 |
| TCONS_00028223 | mRNA | upstream | 56348 | 34169055 ~ 34218156 (+) | False | XLOC_014172 |
| TCONS_00028224 | mRNA | upstream | 57140 | 34180327 ~ 34217364 (+) | True | XLOC_014172 |
| TCONS_00028222 | mRNA | upstream | 57142 | 34169055 ~ 34217362 (+) | False | XLOC_014172 |
| TCONS_00028220 | mRNA | upstream | 398259 | 33850705 ~ 33876245 (+) | True | XLOC_014170 |
| TCONS_00028228 | mRNA | downstream | 32201 | 34311374 ~ 34679738 (+) | True | XLOC_014177 |
| TCONS_00028230 | mRNA | downstream | 463533 | 34742706 ~ 34746878 (+) | True | XLOC_014179 |
| TCONS_00028231 | mRNA | downstream | 671027 | 34950200 ~ 34958185 (+) | False | XLOC_014182 |
| TCONS_00028232 | mRNA | downstream | 673409 | 34952582 ~ 34957888 (+) | True | XLOC_014182 |
| TCONS_00028233 | mRNA | downstream | 723306 | 35002479 ~ 35004947 (+) | True | XLOC_014183 |
| TCONS_00028225 | other | upstream | 67224 | 34207162 ~ 34207280 (+) | True | XLOC_014173 |
| TCONS_00028221 | other | upstream | 138809 | 34135607 ~ 34135695 (+) | True | XLOC_014171 |
| TCONS_00028217 | other | upstream | 508779 | 33732162 ~ 33765725 (+) | False | XLOC_014168 |
| TCONS_00028194 | other | upstream | 1455930 | 32814320 ~ 32818574 (+) | True | XLOC_014160 |
| TCONS_00028183 | other | upstream | 2215905 | 32058477 ~ 32058599 (+) | True | XLOC_014151 |
| TCONS_00028229 | other | downstream | 463533 | 34742706 ~ 34746733 (+) | False | XLOC_014179 |
| TCONS_00028237 | other | downstream | 1499669 | 35778842 ~ 35778957 (+) | True | XLOC_014189 |
| TCONS_00028239 | other | downstream | 1923905 | 36203078 ~ 36203195 (+) | True | XLOC_014193 |
| TCONS_00028240 | other | downstream | 1963618 | 36242791 ~ 36242908 (+) | True | XLOC_014194 |
| TCONS_00028243 | other | downstream | 2400918 | 36680091 ~ 36680207 (+) | True | XLOC_014197 |
