RNA id: TCONS_00030010


Basic Information

Item Value
RNA id TCONS_00030010
length 773
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_014209
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38017599 ~ 38020095 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgttcttcaccagactcgaaccctgtcattgtggtcaactttTATCTGCACCACAAGTCTgttgacgtacatggcgagctattAGGCAGACTggttacagcagaaaaaaagccaTCCTCAttgagGTTTTTTTCCGACAGAATTTGATCAGTCTGATTCTGAAGCCCTGAACGGCAGGAATGAAGTTGTGTCTGAAAACAGGTTTTGATGAGCGCTCCGAGTGCTGGCACGTAAATGAAGCCTTTGAACCTCTCCAGAGAGAGCCGGCTGAATGCCTAATCAACACGGGCCCTGGAAAACACGCAACCGGCCCGGGATTACAGATAAACACTCGCGAACTCGTGGCCATCGTCAACAGCAGCTTTCACACCGAGACAATGGCCCTCTGATCAGAACAATGATTGCGTCTGCCCGGCAGCTGAAGCTTCCCACTCCTATCATTTTAATTAATCCAGTAATATTTCCAAAGCCTGCACTGTATAGGCCTCTAATGAGAAATCTCATCAGAAGTCGGCAATTTGAGCTGAAGCTGGCGTGATGCTCTACCTTTCTCTGTCTCTTTTCAGCCGGCGTCCTTTCAGAGCTTTTCTTCATTTCCAGTAGAATGTGATCTGGCTGTCCGTTAGCAAACTGGATGCTCATTTAGTGCTTTTTGGTGCGCATGTGTGTTCTTGGGTACCCCGGGCTTGGTAAACAGTAAATGATCTATAATCCCAAATCTGACAAAGTTGGGACAGGataaaaaactcaaataaaaaaagaaagaagcgat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029728 lncRNA upstream 69313 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00030009 lncRNA upstream 446923 37569661 ~ 37570676 (+) True XLOC_014204
TCONS_00030008 lncRNA upstream 518920 37494319 ~ 37498679 (+) True XLOC_014202
TCONS_00030007 lncRNA upstream 1389965 36625129 ~ 36627634 (+) False XLOC_014196
TCONS_00030011 lncRNA downstream 358304 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030012 lncRNA downstream 435539 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030013 lncRNA downstream 453345 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00030014 lncRNA downstream 712999 38733094 ~ 38777734 (+) False XLOC_014215
TCONS_00030015 lncRNA downstream 712999 38733094 ~ 38778761 (+) True XLOC_014215
TCONS_00028253 mRNA upstream 89558 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028252 mRNA upstream 89558 37848830 ~ 37928041 (+) False XLOC_014207
TCONS_00028254 mRNA upstream 90108 37857936 ~ 37927491 (+) False XLOC_014207
TCONS_00028255 mRNA upstream 91174 37925616 ~ 37926425 (+) True XLOC_014207
TCONS_00028249 mRNA upstream 175596 37620342 ~ 37842003 (+) False XLOC_014205
TCONS_00028256 mRNA downstream 147373 38167468 ~ 38257744 (+) False XLOC_014210
TCONS_00028257 mRNA downstream 147911 38168006 ~ 38327733 (+) False XLOC_014210
TCONS_00028258 mRNA downstream 147919 38168014 ~ 38327732 (+) True XLOC_014210
TCONS_00028261 mRNA downstream 401964 38422059 ~ 38467554 (+) False XLOC_014213
TCONS_00028269 mRNA downstream 2005946 40026041 ~ 40039906 (+) False XLOC_014223
TCONS_00028250 other upstream 347825 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028243 other upstream 1337392 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028240 other upstream 1774691 36242791 ~ 36242908 (+) True XLOC_014194
TCONS_00028239 other upstream 1814404 36203078 ~ 36203195 (+) True XLOC_014193
TCONS_00028237 other upstream 2238642 35778842 ~ 35778957 (+) True XLOC_014189
TCONS_00028259 other downstream 236181 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028260 other downstream 401964 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028262 other downstream 444036 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028264 other downstream 928477 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028266 other downstream 1854736 39874831 ~ 39874947 (+) True XLOC_014221

Expression Profile

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