RNA id: TCONS_00030015


Basic Information

Item Value
RNA id TCONS_00030015
length 4263
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id XLOC_014215
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38733094 ~ 38778761 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTGTTCATCAGTTTGaaaatttattttcatataaaaaGACACTCTATGAAAACAGTAGAGGACTACTTTGTACAAtcttatgtataaaaaaaacttaaatggtGCAAGGAGGATTCTCTGTGGTAGCCATCTTCTTTAGCCAATGGGATCGTGTGTGCTGGCAAGGGGAGGGATCTGAAAGTTTCAAACACGTCAAGTCATGAAGAAAACATCCTGCTGGTCAGGAAGTCCGGGGAAACATATTCAGTCTTCAATCCGTTCACACCCAGCTGTTGTTCACCATTCATTTTTCAACGATCATCCTCCTCAcaatgcacatatccaaaatacATATCTCATAAATTTGATGTGACTGTAAGGCCATTCTCaagtagtttttttctttttctttttaaagagcAATACATAAATCTGTTCAAAACATAGTTAGTTTAGTGGGGTTTTTGGGTGTAATGCTCCAGTTTCATTAAGTAGGACTCTGTAAACATCTATGAAAAACCCAACACTCATATACATAGACGGAAATAGAGTGGGATGACAAAACATTGAAACAGCTGATGACTGCATCAGATAaaatagcaaaacaaaaaacaaacaggcaCTGTAAAAAAAGCAGGGTTTGCGTACAGGTGTGTGGTTGTTAAGACGGCATCTTATAGAACTTAAATATCCAGCTCACCTGTTTGGTTAATCTTATTGATTTTTCAAAACAAGGCTACAATTGCTTTTCTCAGAACGGAAAGATAAATGACCTCACTTTCTTATAGACTTAATCTAAAATTAACCCCTCTGGTTgcatttgtcttgtttcaagtgggatttgtgtttgtgttttcagcaTTGGAGGCAGGCACACCAACCATGATGCTCTCGCATCAGTTGCTATTATGATTATTGAAGCCATTGAAATTAGCGTTAACTTTAATCTTGGTTAATCTTACCCGACCTAAAAACCTTTAGAGTCAACCACAAGTGTGGTTGAGGTCAACAGAGTGGATGATTTTACTCACTCGTAGAGTTTGGTCTCCATTACACTTACACCCCTAAACCTCATTCTCATCCAAGTCAGGGCACCCCTGTCCCTCTCAGAGTGGGATTTAACTGGTGTTTCATGCATGCTAAGTGGGCACACTAAATACCACACACACTCTAACATGCCTTTAGACCAGGAGACTGAAGCTTAATAACACACTTACTATTACCTGGCCTCTGTTATCTCACtcctatccgggtcacggcaccagtaGGGGATAAAGTCACTAACAAggaccctgaagaccacagcCTCTAATGTCAAACACCAGTGTGCCGCTTCAGGTCAGGAGAGTGAGGTTTTTCACTTCTTTTCCACTCAATCTCTGAATTCTCACaaccatccgggtcacggcaccaatttacACATCCAGTACTCACCCTGCTCTGAGCAGGAATCAGACTGGAAAAGGTGGCACGCAATCTAACAAAACAGTCAAGACTGTAGCCTCTAACAGTCACTAGTGTGCTTCTTGAGACCAGGATTCCACTCAACCCTCAAAAACACAACCATCAGGGTCACGGCACCAACGCAACCATTCCAGTTTAAATTACTCCCCCAGAATACCAGCTTTTGTTTCTGAAATGGGTGGTGTGCACACTTATACTAAATAGCACAACCTCTAGCATTACTTGCTAAtgtgcctttgaggcctgggggaAGAGTTTTTACTCGCACAACCAAAATATATTCCTACATATTCTGTATGCAATATCACAATTATGCTACAGTACTGGATACCAGCACTGCAGATCAGTGTCAACCTTCTGACAAACAGAGCTCTTgttcgtgtgatattgcttatctCATATATGAGAGTAAAATTCTTGACTGCGGTTGAGAAGGGAGACGAGAAACTACTTTTAATTGCCATGGTGGTTTGGAGATTTTTCAGGCGGAAGAGGCGGCCCATGTTCCCCATTAGTGCAGATTACTTGCAAAGGTTAAAATGGCATGCTCTAGTCTTGCCATCTGTGCCTATATGATATGCTGACTTTAGGGATCTTTGAGCAGATGAAATTCGCGCCAAGTAAGAAAATGTCAGGACAAATCGTTATTCTCCCAAGATAATTACCACACCTCTCTCGCTTGTTCGCCCTCTCTTTCTCGCTTTCCGAGTCTCCATGTGGAGTTACATCAGCCAACACGATTAATGAATGGGTTATGAAGAGGAGAAGGGTTGACAAAGATGACCTCGGCAGCCTGCTTAGCATTAAGCTAACTGTCAAACTCCATGGATGGAGTGCAAAAAAATCAGTTCAGCTAGAGTCACTGGTTTTCAGTTTCACAAAGAGCTACTTTTTTAGCGAGAGTAGAAGTGAAGCACAACATAAAGATGGCAAAGAAATGTGGAAACTTCCCTGACAGCAGAACTTTGCGTTGGTTAAAAAAAACTTCTCAGTTTGAATTGGATAAGCCTGATACCAAATTCCAAAGCTTTCTATGACTGGAATGCGCATTATTTTGGTTGTTTTGGAGATGGATGCTTCCCTTAAGTGAAATGATTTGACATTTATCACACATACAATTCTGTAAAGCGTTTTGGAAAGCATGAATAAAACACAATCCCACATGAAATGATACCTGAAGTTTGactgtataatataaaataaaatatatatatatatatatattaaacaaaataatgcacaagcattctaaataaaaatatagaaaacaaAAGAAAGCTAGATAAGCTTTTGTGTACAGTACGCCTGATGCagaggggggaaaaaaagcagAGGATGGCACATATTAATAATCGCTTTCAAAACTTCCCCTCCCTCTCccctgacaaacaaacaaaccaagaaAAAGGGAAACAGAACTTGAGTCATCCAAGAAATGCGAAGACAGAAAGGGGGGAAAAAACCCTAGGGGGTTATTAAACAGTGTGCGAATCATCAATAccgatttttctttttttttttcctctataaaaaaagaagggtgcagaaatattatttttttttgttaaattccCAAATCATCAAACAGGTGAAAGAGAATCCTTTCTGGAGTAAAATCAAGACATTTCAGAAACAGTTTGTTAAAAATTTGTACCATACTCTCCAGGCCTCACTCTTTCACGTAATGTCTCTGTGTGAAAATATAGAATAGAGCACTCTTCATCTCTGGTTTGTCCTGTAAACGAGTACAGAATCCTTTAGAAACGCGTCTTGCTGAAGATCACTGACTGTGTGAGTATGTAAGAGGGTTTAGTTGTCTCTTAGTTtgttgtgggtgtgtgtttttctTCACACTTCAGTCTGGAAGTCTCCTTCGGATGTGTCAGGTGTGTTGACGGAGGATGTGTCCCAGGGTTTACTTCGTAACTCCAGTCTGTCCTTGTGTTCGTTGGAGCCACACGTCTGCTCAGGGGTCATGGTCTTAAAGCTGTCCCAAGATCGCTGGTCATCTGTGGTGGACTTGTCCTGAATATGCACTTCCAAAGATCCAGCCGAGATGCTGGTGTTGGTGCTGCCCAGGTTGCGGGGAAGGGTTCTGGTGCGCTCCACCGTTCCCGAGGTGAGGATCTGCCGGACAGAAGGACGATTCTGCTTGACCTGCAGAGTGTGGGTGTTggtgtgggagtgtgtgtgtccGGCATGGGCCGGTAACTGTTTGAGCGTGCTGTAGGAGCGGTTTAAGTTCATGCTGATGTGGTCTGTAGCTGCAAAGTCTGCAGGGTATGCTTCACTCTCGGCTGGATGCAGAGTCATTGGTGAAGGGGGTGGGGGAAAAGGGGGGTCATCTACTGTAATGTTTAGGGGTTTCCCCTCATCCTGGGGTGGAGGAGGGGGCTTTAGACTGACTGTTCGACGTGGCAACACCATGTAATCCCCTTCCCCACCTCCTCCACCAGTTGAATCCTGGGTGGAAGAAGGATTAGGTCGGGCCCAACCCAACCCACTCTCTGTGCACAGATAGATGGGTCCAGATCGCTGATGCTGACCTTGTTGCTCCACATTGACCTCTTTCTTCAGTGGCTGCTCGCTGAGCTCGTTTAGGGGACCCAACGGAGGTACCTGTACCAGGAGGTTAGGGGGTGGGATGTTTCCAGGCAAACTGCTGAAATTAACGCCTTCCTGATGAGCTGCCAACTTGGGATCATCCTCGTCATCCAGGGAGATGCGAGATAGGGTTCCGGTTATGGTGGCAGGGTTACAGGTGTTCACCTCCTTAAAGATACCTGTTTGGCATGCCAGGTCCACATCTTTCTCAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030013 lncRNA upstream 257229 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00030012 lncRNA upstream 265494 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030011 lncRNA upstream 348470 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00030010 lncRNA upstream 712999 38017599 ~ 38020095 (+) True XLOC_014209
TCONS_00029728 lncRNA upstream 784808 37937807 ~ 37948286 (+) True XLOC_014208
TCONS_00028263 lncRNA downstream 168868 38947629 ~ 38959047 (+) True XLOC_014216
TCONS_00028265 lncRNA downstream 497212 39275973 ~ 39285164 (+) False XLOC_014218
TCONS_00030016 lncRNA downstream 497212 39275973 ~ 39287333 (+) False XLOC_014218
TCONS_00030017 lncRNA downstream 497212 39275973 ~ 39290702 (+) False XLOC_014218
TCONS_00030018 lncRNA downstream 497212 39275973 ~ 39293345 (+) False XLOC_014218
TCONS_00028261 mRNA upstream 265540 38422059 ~ 38467554 (+) False XLOC_014213
TCONS_00028257 mRNA upstream 405361 38168006 ~ 38327733 (+) False XLOC_014210
TCONS_00028258 mRNA upstream 405362 38168014 ~ 38327732 (+) True XLOC_014210
TCONS_00028256 mRNA upstream 475350 38167468 ~ 38257744 (+) False XLOC_014210
TCONS_00028255 mRNA upstream 806669 37925616 ~ 37926425 (+) True XLOC_014207
TCONS_00028269 mRNA downstream 1247280 40026041 ~ 40039906 (+) False XLOC_014223
TCONS_00028270 mRNA downstream 1248198 40026959 ~ 40028071 (+) False XLOC_014223
TCONS_00028272 mRNA downstream 1290763 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028273 mRNA downstream 1290763 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028274 mRNA downstream 1292800 40071561 ~ 40113608 (+) True XLOC_014225
TCONS_00028262 other upstream 266443 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028260 other upstream 306411 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028259 other upstream 476702 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028250 other upstream 1063320 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028243 other upstream 2052887 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028264 other downstream 169811 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028266 other downstream 1096070 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028268 other downstream 1247167 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028276 other downstream 1337501 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028293 other downstream 1558793 40337554 ~ 40344737 (+) False XLOC_014231

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1790091 True 3563 lncRNA 0.40 3 NC_048582.1 56500720 ~ 56504444 (+)
striped catfish (Pangasianodon hypophthalmus) TU477226 True 1281 lncRNA 0.50 2 NC_047623.1 8615192 ~ 8653005 (+)