RNA id: TCONS_00028270


Basic Information

Item Value
RNA id TCONS_00028270
length 688
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_014223
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40025928 ~ 40055391 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATAGAGCCTTTAACAAAGGCTGAACGCCGCACCGGTTCCTCGTCGCCCATTTCagtataaaaatgcattttaactgCTTGGTTGAGATTATAAGTTAAAGAATTGAAGGCAACGCTCTCTTTGCTGCGCAAGCCTGGGGAGAAAACATACACCCAACGTTGTCGTCTTTTTATCGGGAACCTTCCAAACGACATCACTGAACCCGAATTCAGGAAATTGTTCGCAAAGTATGGGGAACCCAGTGAGATTTTCATCAATCAAGGCAAAGGCTTTGGATTCATCCGTCTGgaaTCCCGTGCCTTGGCAGAGGTTGCGAAAGCAGAGTTGGATGATACTCCAATGAAAGGCAGACCACTCCGAGTTCGCTTCGCTACTCATTCTGCTGCACTTTCTGTGCGAAATCTATCTCCGTTCGTGTCCAATGAGCTGCTGGAGGAGGCATTCTCTCAGTTTGGACTGGTGGAAAGGGCTATAGTCATCGTGGATGACCGTGGACGCTCAACAGGGAAAGGCATTGTTGAGTTTTCTTCTAAGCCAGCTGCCCGCAAGGCCATGGATCGCATTAGTGATGGGGTGTTCCTTCTCACATCGTCCCCCCGTCCAATTGTGGTTGAATTGTTGGAGCAGTATGATGACGAGGACGGTTTGCCCGAGAAGCTTGCACAGAAAAACCCCAGTTATCAAA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0021547 midbrain-hindbrain boundary initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021591 ventricular system development biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0048681 negative regulation of axon regeneration biological_process
GO:0007420 brain development biological_process
GO:0043005 neuron projection cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03021 Transcription machinery
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040426-2452 Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development and negative regulation of axon regeneration. Located in neuron projection and nucleus. Is expressed in brain; eye; gut; heart; and muscle cell. Orthologous to human SFPQ (splicing factor proline and glutamine rich).

Ensembl:

ensembl_id ENSDART00000123647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028267 lncRNA upstream 57501 39927406 ~ 39969458 (+) True XLOC_014222
TCONS_00029729 lncRNA upstream 274785 39750058 ~ 39752174 (+) True XLOC_014220
TCONS_00030020 lncRNA upstream 611258 39409323 ~ 39415701 (+) True XLOC_014219
TCONS_00030018 lncRNA upstream 733614 39275973 ~ 39293345 (+) False XLOC_014218
TCONS_00028271 lncRNA downstream 24430 40052501 ~ 40055370 (+) True XLOC_014223
TCONS_00029730 lncRNA downstream 29765 40057836 ~ 40066591 (+) True XLOC_014224
TCONS_00030021 lncRNA downstream 88191 40116262 ~ 40129606 (+) False XLOC_014226
TCONS_00028279 lncRNA downstream 94338 40122409 ~ 40127021 (+) False XLOC_014226
TCONS_00028280 lncRNA downstream 98404 40126475 ~ 40129606 (+) False XLOC_014226
TCONS_00028261 mRNA upstream 1559405 38422059 ~ 38467554 (+) False XLOC_014213
TCONS_00028257 mRNA upstream 1699226 38168006 ~ 38327733 (+) False XLOC_014210
TCONS_00028258 mRNA upstream 1699227 38168014 ~ 38327732 (+) True XLOC_014210
TCONS_00028256 mRNA upstream 1769215 38167468 ~ 38257744 (+) False XLOC_014210
TCONS_00028255 mRNA upstream 2100534 37925616 ~ 37926425 (+) True XLOC_014207
TCONS_00028272 mRNA downstream 41453 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028273 mRNA downstream 41453 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028274 mRNA downstream 43490 40071561 ~ 40113608 (+) True XLOC_014225
TCONS_00028275 mRNA downstream 87906 40115977 ~ 40129484 (+) False XLOC_014226
TCONS_00028277 mRNA downstream 94089 40122160 ~ 40165799 (+) False XLOC_014226
TCONS_00028266 other upstream 152012 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028264 other upstream 1078273 38948572 ~ 38948686 (+) True XLOC_014217
TCONS_00028262 other upstream 1560308 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028260 other upstream 1600276 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028259 other upstream 1770567 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028276 other downstream 88191 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028293 other downstream 309483 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028303 other downstream 930429 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028333 other downstream 2160919 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 2309246 42337317 ~ 42337431 (+) True XLOC_014261

Expression Profile

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