RNA id: TCONS_00028263


Basic Information

Item Value
RNA id TCONS_00028263
length 1160
lncRNA type lincRNA
GC content 0.43
exon number 3
gene id XLOC_014216
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 38947629 ~ 38959047 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAGCCAGAAAAGGAAGTGCAGAAGTACATTCTAGGCTTTGAAGCAGAAACATCATTGATCTGGGTCTGGAGCAAAGCGAAAGCAGTTTGAAGATATCGACAACCGCCTTAATCTACTTCCCATCTACAGTCTACCAAGCTGGGAGCATAACAAAGTGAAAACAACTTCTCCCTTACTGAATTAACTAGCAGAGTGCTTGTTTTGCGGTCGAACGTCAGAAGACGAACTGTTGACTGTCTAATAACAGTACAGCGGGTGCAGACAATGGCAATCAAAGCTAATTAAGCATTGTCTGATTATAATGAGGGGTTAGTGGACAGGTTAACAGCGCAATCAACCCCATCAAGTATTGCCTCGGTCGAGAGACAGAATTAAAACCCACTCAGCATTATGAACTCAAAGGCAAAGGTCGCGGCTGGGGAATTAAGAAGAGCACACTGAGGTAAGGCTGTTGAATGTGTTAGAAAGCAATCGATCATTAGCAAAATACCCTGGTCTGACAacagactttttttctttttgttttttttacttttatgcaCTTATGGTAAGGACTAGTTCAAAGTGGCATAAGTGAGTTTGGTTTTCTTCATGTGTGTTTTATTCTTCATGAGTTGAAACAGTGctgaaattgacttttttttaaacatttgttaatGCGTGGTCATTGCAGTTATTTTTACTTAAGGCTGCTGAATGTATTAGAAAGCAATCAATCAATAGCAAAACATCCTGCTCTGAAAACAGACAAAAAACAGActttttcttttcgttttttACTTTTAGGCACTTATGGAGAGGACTACTTAAAAGTGGTGTAGAAGCTGAAGCTCTCTTCCACGTCATGGCTACTTGGTACTCATCTTTACATATTTCATGAGGCGCTGCACACGGAGCGAACTTCCTCTCCAGAGCCATCGCATGGATAACCCTGGATCCCTGTGCCTTCACACATGCGGAAGCGCCGCTGCCAGCCCGAGTCACAGGTCTTCGAGCACAGGCTCCAGTGATTCCACGCACCCCAGTTCCCTCCACCTGCAAAGAGGAACAGGAGATAAATACGAGGAGGAGAAACAGCCAGAATACTGCAACGATTCGAGGAGGCTTATCAATGGCCATCCACACACTGGAGGATTGATTTAATAAGAGAACAATCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194712

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030015 lncRNA upstream 168868 38733094 ~ 38778761 (+) True XLOC_014215
TCONS_00030014 lncRNA upstream 169895 38733094 ~ 38777734 (+) False XLOC_014215
TCONS_00030013 lncRNA upstream 471764 38473440 ~ 38475865 (+) True XLOC_014214
TCONS_00030012 lncRNA upstream 480029 38455634 ~ 38467600 (+) False XLOC_014213
TCONS_00030011 lncRNA upstream 563005 38378399 ~ 38384624 (+) True XLOC_014212
TCONS_00028265 lncRNA downstream 316926 39275973 ~ 39285164 (+) False XLOC_014218
TCONS_00030016 lncRNA downstream 316926 39275973 ~ 39287333 (+) False XLOC_014218
TCONS_00030017 lncRNA downstream 316926 39275973 ~ 39290702 (+) False XLOC_014218
TCONS_00030018 lncRNA downstream 316926 39275973 ~ 39293345 (+) False XLOC_014218
TCONS_00030019 lncRNA downstream 317956 39277003 ~ 39293345 (+) True XLOC_014218
TCONS_00028261 mRNA upstream 480075 38422059 ~ 38467554 (+) False XLOC_014213
TCONS_00028257 mRNA upstream 619896 38168006 ~ 38327733 (+) False XLOC_014210
TCONS_00028258 mRNA upstream 619897 38168014 ~ 38327732 (+) True XLOC_014210
TCONS_00028256 mRNA upstream 689885 38167468 ~ 38257744 (+) False XLOC_014210
TCONS_00028255 mRNA upstream 1021204 37925616 ~ 37926425 (+) True XLOC_014207
TCONS_00028269 mRNA downstream 1066994 40026041 ~ 40039906 (+) False XLOC_014223
TCONS_00028270 mRNA downstream 1067912 40026959 ~ 40028071 (+) False XLOC_014223
TCONS_00028272 mRNA downstream 1110477 40069524 ~ 40113608 (+) False XLOC_014225
TCONS_00028273 mRNA downstream 1110477 40069524 ~ 40113935 (+) False XLOC_014225
TCONS_00028274 mRNA downstream 1112514 40071561 ~ 40113608 (+) True XLOC_014225
TCONS_00028262 other upstream 480978 38464131 ~ 38466651 (+) True XLOC_014213
TCONS_00028260 other upstream 520946 38422059 ~ 38426683 (+) False XLOC_014213
TCONS_00028259 other upstream 691237 38256276 ~ 38256392 (+) True XLOC_014211
TCONS_00028250 other upstream 1277855 37669660 ~ 37669774 (+) True XLOC_014206
TCONS_00028243 other upstream 2267422 36680091 ~ 36680207 (+) True XLOC_014197
TCONS_00028266 other downstream 915784 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028268 other downstream 1066881 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028276 other downstream 1157215 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028293 other downstream 1378507 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028303 other downstream 1999453 40958500 ~ 40958616 (+) True XLOC_014238

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_03558982_03663042.mRNA True 1824 mRNA 0.57 8 CI01000054 3558982 ~ 3663042 (+)