AMCG00011085 (LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506)


Basic Information

Item Value
gene id AMCG00011085
gene name LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9752696 ~ 9753490 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011085
ATGAACTGGTCCTCACTGGAGGGGCTGCTGAGCGGAGTCAACCAGTACTCCACAGCGTTCGGTCGTGTCTGGCTCTCCATGGTGTTCGTGTTCCGGCTGCTGGTGTTCGTGGTAGCAGCACAGCGCGTTTGGGGCGACGAGAGCAAAGACTTTGAGTGCAACACCCGCCAGCCGGGCTGCACCAACGTCTGCTATGACAGCATCTTCCCCATCTCCCACGTCCGCCTGTGGGCCCTGCAACTCATTTTCATCACCTGCCCCTCGCTGATGGTGGTGGCCCATGTCAAGTACCGTGAGGAGAAGGACAAGAAGCATGCGGCCAGAAACCAGGGCTCCCACCTCTACTCCAACCCGGGGAAGAAGCGGGGTGGGCTGTGGTGGACTTACCTCTTAAGTTTGATATTCAAAGCCAGCTTTGACGCGGCCTTTCTCTACATCCTCTACTACATCTATGAGGGCTATGACATGCCTCTGCTCTCCAAGTGCAACCTGTCACCCTGTCCCAACACAGTGGACTGCTTCATTTCCCGGCCCACAGAGAAGAAGATTTTCACCCTGTTTATGGTGGTCACCTCAGCTATCTGCATCTTCATGTGCATCTGCGAGATGATCTACCTCATTGGCAAACGCTGCCAGAAGACCATGATCATCCGTAATGAGATGGAGAGGAAGAGGATTGCTGAGTCCCTCACTTTCAtcagcaaacagaaaacagagcaGGCTGGACCCCACAGCCACAAACCCTGGGGTGCAGAACAATTGCAACCTGAAGGCAGAGGAGGCTGCAGCCACTAA

Function

NR:

description
PREDICTED: gap junction beta-4 protein-like

GO: NA

KEGG:

id description
K07624 GJB5, CX31.1; gap junction beta-5 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011085 True 795 mRNA 0.55 1 9752696 9753490

Neighbor

gene id symbol gene type direction distance location
AMCG00011083 NA coding downstream 2797 9745248 ~ 9749899 (-)
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 236400 9508584 ~ 9516296 (-)
AMCG00011078 NA coding downstream 253613 9489542 ~ 9499083 (-)
AMCG00011071 pabpc4,LOC107659242 coding downstream 264049 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 279621 9468676 ~ 9473075 (-)
AMCG00011092 NA coding upstream 706072 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1616210 11369700 ~ 11395747 (-)
AMCG00011104 NA coding upstream 1678216 11431706 ~ 11434381 (-)
AMCG00011112 NA coding upstream 1899512 11653002 ~ 11661299 (-)
AMCG00011114 NA coding upstream 1911634 11665124 ~ 11694330 (-)
G104126 NA non-coding downstream 339774 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 487209 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 787117 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 787415 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 941674 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 970100 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1192511 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1662700 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1667259 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 1757733 11511223 ~ 11593619 (-)
AMCG00011086 NA other downstream 8911 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 133417 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 516468 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 888645 8819551 ~ 8864051 (-)
G103832 NA other downstream 1725665 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2205748 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2237339 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2313005 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 2572607 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 2674503 12427993 ~ 12457327 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G118219 LOC107751771,LOC107679991,LOC107583669,LOC107564980 non-coding NC_056715.1 CM032084.1 4236844 ~ 4239945 (-)