RNA id: AMCG00011085


Basic Information

Item Value
RNA id AMCG00011085
length 795
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00011085
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9752696 ~ 9753490 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTGGTCCTCACTGGAGGGGCTGCTGAGCGGAGTCAACCAGTACTCCACAGCGTTCGGTCGTGTCTGGCTCTCCATGGTGTTCGTGTTCCGGCTGCTGGTGTTCGTGGTAGCAGCACAGCGCGTTTGGGGCGACGAGAGCAAAGACTTTGAGTGCAACACCCGCCAGCCGGGCTGCACCAACGTCTGCTATGACAGCATCTTCCCCATCTCCCACGTCCGCCTGTGGGCCCTGCAACTCATTTTCATCACCTGCCCCTCGCTGATGGTGGTGGCCCATGTCAAGTACCGTGAGGAGAAGGACAAGAAGCATGCGGCCAGAAACCAGGGCTCCCACCTCTACTCCAACCCGGGGAAGAAGCGGGGTGGGCTGTGGTGGACTTACCTCTTAAGTTTGATATTCAAAGCCAGCTTTGACGCGGCCTTTCTCTACATCCTCTACTACATCTATGAGGGCTATGACATGCCTCTGCTCTCCAAGTGCAACCTGTCACCCTGTCCCAACACAGTGGACTGCTTCATTTCCCGGCCCACAGAGAAGAAGATTTTCACCCTGTTTATGGTGGTCACCTCAGCTATCTGCATCTTCATGTGCATCTGCGAGATGATCTACCTCATTGGCAAACGCTGCCAGAAGACCATGATCATCCGTAATGAGATGGAGAGGAAGAGGATTGCTGAGTCCCTCACTTTCAtcagcaaacagaaaacagagcaGGCTGGACCCCACAGCCACAAACCCTGGGGTGCAGAACAATTGCAACCTGAAGGCAGAGGAGGCTGCAGCCACTAA

Function

GO: NA

KEGG:

id description
K07624 GJB5, CX31.1; gap junction beta-5 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 339774 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 487209 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 787117 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 787415 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 902735 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 970100 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1192511 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1662700 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1667259 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 1757733 11511223 ~ 11593619 (-) True G104341
AMCG00011083 mRNA downstream 2797 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011086 mRNA downstream 10073 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011084 mRNA downstream 133417 9601377 ~ 9619279 (-) True AMCG00011084
AMCG00011077 mRNA downstream 236400 9508584 ~ 9516296 (-) True AMCG00011077
AMCG00011078 mRNA downstream 253613 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011092 mRNA upstream 706072 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011103 mRNA upstream 1616210 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011104 mRNA upstream 1678216 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011112 mRNA upstream 1899512 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011114 mRNA upstream 1911634 11665124 ~ 11694330 (-) True AMCG00011114
TU130270 other downstream 8911 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 149955 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 516503 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 889030 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 2241923 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2313975 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2572607 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 2682381 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 2794799 12548289 ~ 12548993 (-) True G104715

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU174729 True 2992 lncRNA 0.38 2 NC_056715.1 4236844 ~ 4239945 (-)