AMCG00011126 (lypla2)


Basic Information

Item Value
gene id AMCG00011126
gene name lypla2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11918704 ~ 11924459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011126
TTCTAGAGTCTACGGCACCGAGCCCGGCCCGGGAACCCGACATAGCGGACCGGCCCGGCGGGACCCAACCGGACCGGAGCTCATACCGGCTGCGTTGGGCCAGCTGGGGAGCGCCCCCTCCAGTGTATGTGTGGTAACAACATGTCTGTGCCGCTGCTTGCTGAGGCCGTGACGGTGTctgggacagagagggagaccgCTGCGGTAATTTTCCTCCATGGGCTGGGAGATTCAGGgcatggTTGGGCAGATGCTATGTCCTCCATCAGGCTGCCTTATGTGAAGTACATCTGTCCCCACgcGTTTGACCTGATGGGTTTGAGCCCCGAGTCTCCGGAGGACGAGGCTGGAATCAAGAGGGCAGCAGAGAACATTAAAGCCATCATTGACCATGAGGTGAAGAATGGGATCCCCTCTCACAGAGTGCTGCTCGGGGGGTTCTCTCAGGgtggtgctctctctctctacactgcTCTCACCAGTCAACACAGGCTGGCTGGAGTCGTGGCGCTGAGCTGTTGGCTGCCTCTGCACAGGAGCTTCCCCCAGGCGGCCAGTGGCAATGCCAACCAGGACATGGCGGTGCTGCAGTGCCACGGGGAGATGGACCCCATGATCCCGGTCCAGATCGGGGAGATGACTGCAGAGAAGCTGCGCACCCTGCTGCCCCCACACAAGGTTACCTTCTCCACCTTCCCTGGACTGATGCACAGCTCTTGCCCACAGGAGATGTCTGCAGTGAAGGACTTCATTGAGAAGCAGTTGCCCCGAATCTGACCTCTACTGTGACCCCTCACCTCTCACCTCTGACCTCCAACCCACCACTCCCTGACAGGAAACAGCCATGGACACCCCAATactcacacactgtaacactggTTCCCTCtacttttttcctctccttctctcccttcctctctgtccctcagtgTGCTTGTTCTGAGTTCTGCCCCCTGGTGCAAGAGGCTGTAGTGTTGGGGTGTGTACAGCAGGGGGCACCCAGTCTCACTCACACAGCAGTGCTCCCCCTGGAGCTGCAGAGCAACACACTGTAACTgagccccccccacacacacacacgcaccgcAGACACCAGTCACCACCTCTCCCTGCCCctccctttctccttctctctgtgcgtctctaaGAGGGTGCTGCTGTCAGTGTGGCCAACAGGCTCTGGGCTCTTGATTGTGGTGCGGTCTGGGTTagccctcctcctccctcacagctcctcttcctccccagTTCTGGTTCTGTTCTGTCTTCCCGCTCTCGTCTGTCAGCGTTTCCTCAtcttctgatttttattttttattttatgttttggtgtgtttatttttagggTCCCTGTGAAAGTTTTAATCTCTGTGTGgacggactgactgactgactatcTATCTGACtgattgatacactgactgacttattgatacacagatacactgactgacagagacactgagacgtAGCTGATGAGGTGAGtgagcagacagacagacagacagacagacggacaggtGGTTATGTAGCTGCAAGGACATAGAGACAGGCAGTCAAACAGTATAACAGACAGATAGCTGAGAGGACCGAAAAGAGACGGACAGTTTGTTGGGGTCGAACAGGCAGgtagagagaaacagacaggaagtcagttaggtctgtttttttttgtttgttgttgttatttgtttgttattgatttggctgtttgtgaaataaataaattgatgaaTCAATAAACAACTTAGACAACAC

Function

symbol description
lypla2 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA2 (lysophospholipase 2).

NR:

description
PREDICTED: acyl-protein thioesterase 2 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K06130 LYPLA2; lysophospholipase II

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011126 True 1758 mRNA 0.54 9 11918704 11924459

Neighbor

gene id symbol gene type direction distance location
AMCG00011123 sfpq,LOC107558579,LOC107706594 coding downstream 1683 11907461 ~ 11917021 (-)
AMCG00011130 NA coding downstream 19456 11891687 ~ 11899248 (-)
AMCG00011124 NA coding downstream 27606 11872604 ~ 11891098 (-)
AMCG00011117 ak2,LOC106570014 coding downstream 58704 11855231 ~ 11860000 (-)
AMCG00011118 NA coding downstream 64807 11839260 ~ 11853897 (-)
AMCG00011132 NA coding upstream 2641 11927100 ~ 11929873 (-)
AMCG00011127 NA coding upstream 5937 11930396 ~ 11937533 (-)
AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding upstream 23781 11948240 ~ 11951000 (-)
AMCG00011128 NA coding upstream 27657 11952116 ~ 11958308 (-)
AMCG00011129 NA coding upstream 54494 11978953 ~ 11984808 (-)
G104449 NA non-coding downstream 221645 11663592 ~ 11697059 (-)
G104376 NA non-coding downstream 261871 11649005 ~ 11656833 (-)
G104342 NA non-coding downstream 324362 11587058 ~ 11594342 (-)
G104341 NA non-coding downstream 325085 11511223 ~ 11593619 (-)
G104319 NA non-coding downstream 492479 11420749 ~ 11426225 (-)
G104513 NA non-coding upstream 52892 11977351 ~ 11978288 (-)
G104545 NA non-coding upstream 114710 12039169 ~ 12039376 (-)
G104568 NA non-coding upstream 152269 12076728 ~ 12144122 (-)
G104591 NA non-coding upstream 211509 12135968 ~ 12142015 (-)
G104598 NA non-coding upstream 231983 12156442 ~ 12156731 (-)
AMCG00011086 NA other downstream 2174919 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 2299425 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 2682476 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 3054653 8819551 ~ 8864051 (-)
G103832 NA other downstream 3891673 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 34779 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 66370 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 142036 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 401638 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 503534 12427993 ~ 12457327 (-)

Expression


Co-expression Network