AMCG00011219 (LOC103361792,LOC102209146)


Basic Information

Item Value
gene id AMCG00011219
gene name LOC103361792,LOC102209146
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14396782 ~ 14411016 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011219
ATGGCAAAGAAAGGGCGTTCCAAGGGCGAGAAGCCTGAAGCTCTTATATCTGCCTTACAGGCAGCCAATGAAGATCTCCGGTCTAAACTGACTGATATTCAAATAGAACTACATCAAGAGAAATGCAAGGTAAGTAAGCTTGAACGTGAGAAGGTTCAGGAGTGCAAGCGGATCCGTGAGCAGGAACAGCACAAGCACACGGTGACGCTGACAGATTTGAAGGCCAAGCTGCACGAGGACAAGATGAAGGAGCTGCAGGCACTGAGGGAGACCCTGGTGAAGCAGCACGAGCAGGAGCTGGCCCGCACCGTCAAGATCAAGGACGCCGAGAACCTGCGGCTCAAGACGGCCCTCGCAGGTCTGCGGGATGGCAGCAGCGAGAAAGTGAGGACAGCTATGACGCTGGAGGCCAGGGAGGAGGCCCGGAAGTTCTTCGACTCTGAACGGCTGAAGCTGCTACAGGAGATCGCCGAGCTCAAGTCGGCCAAGAAGCAAACGGACGAGGCGCTCACCAACGTGATCCAGGCGGACAAAATGAAAGCCGGGGACCTGAGGAGCGAGCACCAGTTACATCAGGAGCAGATCTCCAAGATTAAGTGGGACTGTGAGAGGGACATCCGTAGGCTTGTGGACGAGATCAAGTCGAAAGACCGTACCATCTTCTCACTGGAGAAAGAGCTGGAGGCGCAGACGGGGTTCGTGCAGAAACTGCAACTGCAGAAGGACGCTCTGGACGAGCAGCTGTTCCTGGTGAAGGAGGCTGAGTGCAACCTGGGCAGTCCCAAGCGAGAGATCCCGGGCAGGGCAGGGGATGGGGCGGAGCACTGCGGGAGCCCGGACATGCGCAGGAACCAGAGGAGGGTGGCAGAACTGAACTCCACCATCAGGAAGCTGGAAGACAGAAATACGCTGCTGGTTCACGAGAGGAATGAACTGGTAAAACGTGTGCGGGAATCTGAGAAACAGTGTAAACCACTGCTGGATAGAAACAAATTGCTCAGCAAGAGAAACGATGAGCTCACCCAGTCTCTTCAGCGCTTAGAGGACAAGCTGAAAGCACTAACGAAAGAAAACCTTGAAATGAAGGAAAAGATGAGCTCTCACGCTCCTCTGAAGAAACTGAAGTCCTTGAATGACCTGGATCAAGCTCACGAAGAACAAGAAATAGAATTTTTAAAACTACAGGTTCTCGAACAACAGAACATGATTGATGACTTAACCAGGGACAGAGAGAAACTGATTAGAAGGAAAAGGCATAAACGAAGTTCCAAACCCATTAAGAGGCACATAGTAGTGGACACCTTCTTTGGGTACGGCGAGGAATCGATGGACTCTGACACCTCATCTGTGGCTTCCTTCAGGACAGACCGAACACCAGCCACTCCTGATGAAGACCTGGATGAAGGATTGGCGGCAGAGGAATCGGAGCTGCGCTTCCGCCAGCTGACACGGGAGTACCAGGCCCTCCAGCGAGCCTATGCCCTCCTGCAGGAACAGAAAGGGGGGGTCCTGGATGCAGAGAAGGAAGCCAAGGCTCACGAACAGCTTCAAGCCGACGTTCTCAGGTATAAAGCTAAAATCGAAGACCTTGAAAAAGAAATTGCCCAAAAAGGACAGgTGGAAAAACTGGAAGCTGACATAAACCGGCTTCAACAAGAATTACAGGATTCCAGGGACCAGAATGAGCTACTAGAGTTTCGTATTTTAGAGTTGGAGgaGCGTGAAAGAAGATCCCCACCTTTTAATCTCCAGATCCACCAGCCCTTCTCTGATGGTGTCAGTGCTCTCCAGATCTACTGTATGAAGGAGGGGGTGAAGGATGTATGTATTCCTGATCTCATAAAGCTCCTGGATATTCTTGGAGACAACGGGaATCTAAGGAATGAAGAGCAGGTGGCCATCATACAAGCCAGCACAGTCTTATCACTCGCAGAGAAgTGGATACAGCAGATTGAGGGCACGGAGGCGGCTCTGCATCAGAAAATGATCGATCTGGAGCTCGAAATGGAGATGTTTTGCAAGCAGAAAGGCTATCTGGAAGAGGAACTGGATTACAGGAAGCAAGCTCTGGATCAAGCTTACATGCACATCCAAGAGCTGGAGGCCACCCTGTACAATGCCTTACAGCAGGACACGGTGATCAAGTACGGGGAGTCCCTGAGCGAGAAGCAGAAGGACGAGCTGCGCACGGCCGTGGAGAAGCTGCGCCGGCAGATGCTCCGGAAGAGCCGGGAGTACGACTGTCAGATCCTGCAGGAGAGAATGGAGCTGCTGCACCAGGCCCATCAGagaatCCGAGATCTGGAGGATAAAACAGACGTCCAGAAGAGACAAATCAAAGACCTTGAAGAAAAGACTGTATGGCAGTGTGGACAAATTGTACAGAACAACAATGGTTTCCGTCTTTATAATGAACCAAGCCTTGTTTACAGCTAACATTTGTGTAGCAACGGCTACTCTGACCTATTTTGAATAAGCCATTCGCTGGATTGGTTGCTTGACAGTTCTTGAGACCCAATCTGAAGTTTCGTTATATGCTGCATTGAACTGATCCTGCGTTACCCAGTCAACTAAACCTTTACCTTGTGAGAAGACATAGACGCTCACCTGAACTCCTCTAGCAAAACACGTCTCTGACATCAAACCAAAGTTGGGAAGATGCTATCTCTGCTGTGCAGGGGAAAACTGAATAACTTAACTAGACTAGTAACTGGCAAGGAATGCAGGAACAGTGAGATTTgttaggggggtgggggggaaaccTAAAAGACCTCTATGGGAAAGGATGTTTCAGATTCTCTCTTCCACAAACCACATCAGGAAAGTGTTGGAAAGCTGCCGGCTATCAGGCAGGGATTAGGTGAAACTCTCTCAGGAACTGTGATCAAGGTGACTCACTATACTGTATCTACACACGCCACACCGGAGGGGCAAGACAAAAAGCATCCCACAAATGAGCTGTAAGTGGATCTCCTAGAGAGATAGAGCAGGAGAAACAGACCCATCCCAAACAGACAGCATGAAAACTACACCACCTAGGTTCACAGAGACTTCACACAGTTTGACTACATAATCTGCTGAAAATTAAACACTGTCATTATAAGATGTCCTGAACCTGTTACATCTGTATCTTTTAAAAGCGAAAGGACTGCATTTGCTCACTCACCtctagtgtttttttaaacacttccTGTTTGACACATTGTCCCCAGATGTTTCCTGAAACAATGGCCtctaacatactgtatattaatatacctTTGTTGATATGTACATGACTGTGTATGTTTATGAATTGTAACTGCTTTCCTTTCCATTTGTGAATACtttggattgatttatttattttttaaacaaattgcaGCTTGAACAATAGAATCCCttgctgtttttattactgtataAATTGTTCTGTTATTGTGGTGACAGCTGCAAATGAACCTtactattttcaaatgtaagtaTCGAATTggaagatttgttttctttgttcttattttttactGTGAAAAGTAAATATTCTATACCAGCAGGAAACACACCAATGCATTGGTCCTACTCTAGTTATCAGCTGTTAGCTTGTTAAGCATTTTTTTGGACATAATACAGCTTGCTGAGTCTGCAAAGAATATCATATTTCTGTGAGCACTGTTGTAATTGGctctgttttaattgaattggcTATATTTTATCTACTTCTCCGGAAACATTTAATCAGAGACTGACCTTAGTCATGCCAAACCTCACAAGCTTTGCAAGCCAGAACACTATACTGACCTCTAGCCGTTGAAAGAAGAGAAAGTCGGGGTAACTGATATGGAAGCATTGTCTTTTCCTTCACCAGGGCTATGTATTTGCTTTGCAATATTAAAGAGACTGAAAGACCGAAATGCATTTTCCAGCTTCTGCAAGTCGCTAACAAGCTTTGGCTAATTAAGATCTTAAAGGATTGAAACCTGTACATTTATTGTTGCATACTCTTAGCTTATGTTAAAGGGGAATGACAGAAACTCACCTGACCTATCTTTGACTGAGCTGACTTGTATACTTTGATAGCAGTTGCCTTAAATGCtctgtccttttttttccccccgactgctttttaattatatagCATGACTTACATATTGAGTGTATTATTTACATCTGggctggttttcatttcatctGACTTATTTTGATTGTTCTAGCTGTCtttctttatcttttcttttgttttttacttctgTCTTCCAAGAGAAACTTACTTTACAAACTGCTCATCTCTCCGtctttgttatatataaagGACAAAAAATTAGGAAAAATATGACAATAAACTTCATGGCCTTCAGTTTTCagattgtactttatttttcgAGGATGGTTGTGCTTTGGCAACGATCTAATACATCTATGTGTCTTCACCTTTCCATTTCTGTGCATATACCATGCAGAGATTTGACCCATTGTGGTGGAATATGTGCCATCTGAGATGAAGAGGGCTTCTTTCTTCCTGTGCAATTGTTATCAGAGCCAGTGAGCCTAATGGATTTTGGTCTGGGCATTTACAGATGCTGCAGACTGTCACACAttcaaaatgtg

Function

NR:

description
PREDICTED: janus kinase and microtubule-interacting protein 2-like isoform X2

GO:

id name namespace
GO:0019900 kinase binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K24784 JAKMIP2; janus kinase and microtubule-interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011219 True 4584 mRNA 0.46 19 14396782 14411016

Neighbor

gene id symbol gene type direction distance location
AMCG00011215 sfxn1 coding upstream 16976 14366440 ~ 14379806 (+)
AMCG00011217 NA coding upstream 91160 14287756 ~ 14305622 (+)
AMCG00011214 NA coding upstream 199876 14196535 ~ 14196906 (+)
AMCG00011213 LOC106567451,LOC106603869,LOC107661726,LOC108441632,LOC107713183,LOC107662844,LOC107587249 coding upstream 300729 14095155 ~ 14096053 (+)
AMCG00011212 NA coding upstream 320365 14072368 ~ 14076417 (+)
AMCG00011220 NA coding downstream 8712 14419728 ~ 14426630 (+)
AMCG00011218 dpyl3,dpysl3,LOC106567513,LOC105900346 coding downstream 16463 14427479 ~ 14449677 (+)
AMCG00011221 NA coding downstream 91964 14502980 ~ 14538859 (+)
AMCG00011224 LOC108435599,LOC101068624,LOC105904085 coding downstream 187174 14598190 ~ 14608583 (+)
AMCG00011226 NA coding downstream 485180 14896196 ~ 14906606 (+)
G105078 LOC103376870 non-coding upstream 134766 14218950 ~ 14262016 (+)
G105051 NA non-coding upstream 325813 14070400 ~ 14070969 (+)
G105046 NA non-coding upstream 333625 14062700 ~ 14063157 (+)
G104980 NA non-coding upstream 537800 13858651 ~ 13858982 (+)
G104979 NA non-coding upstream 538590 13857831 ~ 13858192 (+)
G105113 NA non-coding downstream 45086 14456102 ~ 14459018 (+)
G105143 NA non-coding downstream 253604 14664620 ~ 14665153 (+)
G105144 NA non-coding downstream 259703 14670719 ~ 14670928 (+)
G105145 atp10d,atp10b non-coding downstream 260282 14671298 ~ 14671549 (+)
G105186 NA non-coding downstream 517627 14928643 ~ 14928940 (+)
AMCG00011209 cpeb4,LOC106603870 other upstream 335755 14013121 ~ 14061027 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other upstream 403937 13985665 ~ 13992845 (+)
AMCG00011204 NA other upstream 518500 13868337 ~ 13878282 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 1453700 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 1717353 12670376 ~ 12679429 (+)
G105139 LOC100846954 other downstream 208674 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 909764 15320780 ~ 15322658 (+)
AMCG00011250 NA other downstream 1061243 15472259 ~ 15487372 (+)
AMCG00011253 NA other downstream 1439630 15850646 ~ 15852389 (+)
AMCG00011252 NA other downstream 1442748 15853764 ~ 15855784 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_00760116_00779888 JAKMIP2 coding CI01000040 null 760116 ~ 780882 (-)