AMCG00011291 (pou4f3,LOC106603866,LOC106567605)


Basic Information

Item Value
gene id AMCG00011291
gene name pou4f3,LOC106603866,LOC106567605
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16934506 ~ 16935842 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011291
ATGATGACCATGAACAGCAAGCAGCCTTTCTCTATGCACCCTGTGTTACAGGAACCAAAATACTCCAGCCTGCACTCAAGTTCAGAGGCTATGCGCAGAGTTTGCCTTCCAACCCCACAGCTCCAGGGCAATATATTCGGAGGCTTTGATGAGAGTCTGCTTGCCCGCGCCGAAGCTCTGGCGGCTGTTGACATTGTCTCCCACGGCAAGAGCCATCCTTTCAAGCCAGACGTGACCTACCATACCATGAGCAGTGTCCCCTGCACCTCTACCTCTTCCACAGTGCCCATCTCTCACCCGTCCACCCTGACCTCTCACCACCACGTCCATCAGAGTTTGGACGGGGACCTTCTCGACCACATCTCGCCGAGCCTGACAGTCAGTGGGATGGGGGCACCCGATCCATCTGTCATGTTTGAGTCGTTGACCTTGTCCCACAACAACATGATTGCCCTCAAACCGGTGCTGCAAGCCTGGCTGGAAGAAGCAGAGGCGGCGTACCGGGAGAAGAACAGCAAGCCCGACCTCTTCAACGGCAACGAGAGGAAGCGCAAACGCACGTCCATCGCCGCCCCAGAGAAGCGCTCCTTGGAGGCGTACTTTGCCATCCAGCCCCGGCCCTCGTCGGAGAAAATCGCTGCCATCGCAGAGAAGCTGGACCTTAAAAAGAACGTGGTTCGAGTCTGGTTTTGCAATCagagacaaaagcaaaaaaggATGAAATACTCGGCGGTACATTAA

Function

symbol description
pou4f3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm and nucleus. Is expressed in auditory receptor cell. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 15 and autosomal dominant nonsyndromic deafness 52. Orthologous to human POU4F3 (POU class 4 homeobox 3).

NR:

description
PREDICTED: POU domain, class 4, transcription factor 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011291 True 741 mRNA 0.55 3 16934506 16935842

Neighbor

gene id symbol gene type direction distance location
AMCG00011292 kif3a coding downstream 14312 16910320 ~ 16920194 (-)
AMCG00011286 NA coding downstream 130216 16776351 ~ 16804290 (-)
AMCG00011282 NA coding downstream 170011 16753656 ~ 16764495 (-)
AMCG00011284 NA coding downstream 188294 16745597 ~ 16746212 (-)
AMCG00011283 NA coding downstream 234585 16664913 ~ 16699921 (-)
AMCG00011294 NA coding upstream 42756 16978598 ~ 17004504 (-)
AMCG00011297 kctd16,LOC106603861 coding upstream 212173 17148015 ~ 17159586 (-)
AMCG00011299 kctd16,LOC106603861 coding upstream 237855 17173697 ~ 17203530 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding upstream 376609 17312451 ~ 17342762 (-)
AMCG00011304 NA coding upstream 443884 17379726 ~ 17395987 (-)
G105607 NA non-coding downstream 39432 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 209353 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 687205 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 696821 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 793168 16139099 ~ 16141338 (-)
G105701 NA non-coding upstream 373948 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 623560 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 628327 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 818485 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 861601 17797443 ~ 17800287 (-)
AMCG00011271 LOC107562913 other downstream 836327 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 960634 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1418831 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1561327 15370402 ~ 15373179 (-)
G105050 NA other downstream 2865945 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 8090 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 781784 17717626 ~ 17751099 (-)
G105770 NA other upstream 815411 17751253 ~ 17751502 (-)
G105793 NA other upstream 1063826 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1244804 18180646 ~ 18191195 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019096 zgc:158291 coding NC_007132.7 CM002905.2 38312549 ~ 38315241 (+)