G105473 (vdac1,LOC106567523,LOC107557296)


Basic Information

Item Value
gene id G105473
gene name vdac1,LOC106567523,LOC107557296
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 16236128 ~ 16237685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131922
aaaaaaaaaaaattacaaaagagGCCTCACTTAATGTACAGTTGCACACTGTCACTTACACATTTGTGTGGAGCTGGAACTCATCCGTCTTGTATCCAACGGCAAAGTTGCTCTGAGTGACCCTTGATTTCCCAGTCTCGAAGGTCATCTGGTAGCCGGCCAGCCAGCCCTCATAGCCGAACACCATGGCTCCGCGTACGCAGGGCCCGGCAATGTCGAAGTCTACATCGCAGCCCAGATTGATGTGCTCTCTCTTGTAGCCAGTCTTAATCTTACCACTCTTTTTCCTATAGCCAGTGTTTGGTGAAAATGATGAGTCGAAAGTCAGCTTCAATCCTTTGGCAAGCTGAACAGAAAGGAAATCCAAGTTTGGCATGTGAAGGTTATACTTGTACCAATTTGAATCGTCACCATTTCGACCTCTCCCTCTGGTTTCATGAGCATTACCTGGTCTTCGATAGTGATCTCCGTCCCCAAGGTGTTGTCAGTGTTCCATTTCTCGGTGAAAGTCAAGCCGTGCTCCGCCCACTTATACTTGGTTTCCAGGCAGCCTGTCACTTTGCTGGTTTCAGTGTTCGCAGACCCTGAGCTGGTGAATTCCTGAAATCGTATTGAATACAAAATGATACTCACATTAGAGCATTAAGAACCCCTCACAAGCATGCCAAACTACACTGGGAAAGGGCTGGTCCTTTCCCGAAGAGGGTTTGGGTGAAGCCCACAAGGTGAGAGAAATGTTTTTACCCCTTCAGGCAGAGGATAATTTAGAATGTTGAGGTTTTCAGAATACTGAACACTTTATACTTAACTTTATGATACTTGTAAACTTCAGTGCTTGCTTTAACTATATCCATAAAACAGCATCATGTAGGGGAATGTAAGGTATGTTTATTAAATTGGACTTAAAACGTGTAATACAAATGGCGACCTTACATGTTGAGTACCAA

Function

symbol description
vdac1 Predicted to enable voltage-gated anion channel activity. Predicted to act upstream of or within anion transmembrane transport and apoptotic process. Predicted to be located in membrane raft; mitochondrion; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human VDAC1 (voltage dependent anion channel 1).

NR:

description
voltage-dependent anion-selective channel protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131922 True 947 lncRNA 0.44 2 16236128 16237685

Neighbor

gene id symbol gene type direction distance location
AMCG00011273 NA coding downstream 36589 16198120 ~ 16199539 (-)
AMCG00011274 tcf7 coding downstream 59062 16149736 ~ 16177066 (-)
AMCG00011272 ube2al,ube2a,ube2b,LOC105934920,LOC103029486,LOC103021436,LOC104955100 coding downstream 121169 16110270 ~ 16114959 (-)
AMCG00011264 sec24a,LOC102796029 coding downstream 211379 16004972 ~ 16024749 (-)
AMCG00011266 NA coding downstream 231738 16000144 ~ 16004390 (-)
AMCG00011279 rapgef6 coding upstream 302972 16540657 ~ 16579592 (-)
AMCG00011281 NA coding upstream 399611 16637296 ~ 16664404 (-)
AMCG00011283 NA coding upstream 427228 16664913 ~ 16699921 (-)
AMCG00011284 NA coding upstream 507912 16745597 ~ 16746212 (-)
AMCG00011282 NA coding upstream 515971 16753656 ~ 16764495 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 94790 16139099 ~ 16141338 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding downstream 201105 16032251 ~ 16035023 (-)
G105326 NA non-coding downstream 667004 15535370 ~ 15569124 (-)
G105282 NA non-coding downstream 831895 15385716 ~ 15404233 (-)
G105298 NA non-coding downstream 839736 15391732 ~ 15396392 (-)
G105479 NA non-coding upstream 7011 16244696 ~ 16247301 (-)
G105553 NA non-coding upstream 417562 16655247 ~ 16725153 (-)
G105607 NA non-coding upstream 656275 16893960 ~ 16895074 (-)
G105701 NA non-coding upstream 1072105 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 1321717 17559402 ~ 17561795 (-)
AMCG00011271 LOC107562913 other downstream 137949 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 262256 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 720453 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 862949 15370402 ~ 15373179 (-)
G105050 NA other downstream 2167567 14067215 ~ 14068561 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 706247 16943932 ~ 16961069 (-)
AMCG00011313 NA other upstream 1479941 17717626 ~ 17751099 (-)
G105770 NA other upstream 1513568 17751253 ~ 17751502 (-)
G105793 NA other upstream 1761983 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1942961 18180646 ~ 18191195 (-)

Expression


Co-expression Network