G102466


Basic Information

Item Value
gene id G102466
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 1149434 ~ 1151389 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU127958
AAAGGCAGCGCAGCAgccgctctgtctctctctctctgcggcGTCCTGGTGTAGACGGATGGAGGCGCTGGGAGGCCCCTCACTGGCTACGGAGCCCGGAGCCCCGGTGACCCGGGAACAGCCTTCACCAGTCCGACTGCGTTACTCGGTGCTACGGTTGCAGTGGCCGCACGTTGGTAGGTCGTGGCTGTGATGGCACTGGCTGGCACCCCGGCTCCCCGGCCCTGCGTGTACAGGAGCCCCTGGCTGAGGAGGACGATGGCGCTgcagtgaggaagaggaggccaGCGAGGTGAGACCTGTTCGTCTAGCACGAGTCCGTGCTCGGCTGGTTGCATAAGAGGTCTTGATTGCTTTTAAGTCCAAAATAAATGGGACTATtgcacaaaaatacaatttagtttGGTCTTTAATTTTCAGTAATTGTTTAAACCTaccctacaccaggcttaaatgggACAAAAGCATCTCTTGCTATTGAAGCTCGCATGAAACCATTCTTATATGAAAGGGCATGTCGAGAGGGTATTTAAGGACAGACCAAACCCTTGTCgtataaataattcagaaatggCACTGGAGACTGCAAAAGCTCTCATCAATCAATACTTGACTACATACAAAGTAATGCAAGTTTAACTAATAATAGTTGCAACGAATATGACGCATGtctaatttaataatgtattaatagttaatataaaagtgttaaaatatataaattagtgTTTATTCTGAAGTGACCACTATTAACCAACAactcttaataaattacaataatactcTTCTCCTTTTAACTCTAATCTTGCCATTTTTAactaacattttgatttctaaatCAAATTTTTCCTTTACAAGAAAGTCCCTTCAGTATAAAGGTCCTCTCTTTGAACCTGGTTTTTCTTTTAGTCTGAATGGTGCTGAACATCTTCAGAATCTggaattaaataagtaaatgtcctGTTGGAGTCGGTAAGATGgctgtaaaataagcaaaacataTTGGTGACTGACTATACAAATAGGCATGTTAAAATTAGTAGTTGTATTAAACACCACTccaaaacaatatgcatttatattttaaatctaataaGTGTTTCACTATCAGATTGCACAGTGAGGTTTGCAGAAGCTGTCCGGTAACTAGAGGGTTAGAAATGTGATGAGCAACGGCAGGACGTGTCCCCCCTCGGTGTCGGCGAGTTGTAGGTCTAAAAACCACTCATTGAACTTCTAAAAATGTAGTATACACTTTATTAttgaatgtactgtatttaaacaaaataaactgaagttaaagtttaaaaaactgaattttaacaCATGTTTACAGTCCGCACTGGTGGGGTTGATGgcatttgtgttatttcattccaggctttatttttatttgcatttccccCCAAATTTACCTGTTATTAGTTGCCCAACTATCGCAAGTTTTTAATCTTCAgtgagatttgtattttttacttgacaagcagccttttttttttctccaaaatcATAATAGACTTTGCCGTTTAGCAACAGCAGGTAAGCCAGGCTGACGTAGGACCTGTGA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU127958 True 1567 lncRNA 0.41 2 1149434 1151389

Neighbor

gene id symbol gene type direction distance location
AMCG00010813 NA coding downstream 12597 1132770 ~ 1136837 (-)
AMCG00010807 maneal,LOC105903681,LOC106583256,LOC102777073 coding downstream 92513 1042001 ~ 1056921 (-)
AMCG00010802 NA coding downstream 205968 935183 ~ 943466 (-)
AMCG00010799 grik3,LOC106605119,LOC106583195 coding downstream 519541 587856 ~ 629893 (-)
AMCG00010798 grik3 coding downstream 572260 565231 ~ 577174 (-)
AMCG00010819 NA coding upstream 14711 1166100 ~ 1209262 (-)
AMCG00010818 taf12,LOC107705731,LOC107588503,LOC107566933,LOC107755488,LOC107700725 coding upstream 63016 1214405 ~ 1219326 (-)
AMCG00010817 NA coding upstream 70698 1222087 ~ 1242650 (-)
AMCG00010828 NA coding upstream 641388 1792777 ~ 1796592 (-)
AMCG00010829 stmn1,LOC107587743,LOC104924882,LOC103040240,LOC107700727,LOC107597104 coding upstream 646830 1798219 ~ 1800760 (-)
G102443 NA non-coding downstream 141306 1005117 ~ 1008128 (-)
G102433 NA non-coding downstream 174793 974435 ~ 974641 (-)
G102432 NA non-coding downstream 183218 965962 ~ 966216 (-)
G102372 NA non-coding downstream 588637 560434 ~ 560797 (-)
G102367 NA non-coding downstream 661903 487273 ~ 487531 (-)
G102470 LOC108245179,LOC103363630 non-coding upstream 5167 1156556 ~ 1161075 (-)
G102498 NA non-coding upstream 103331 1254720 ~ 1257986 (-)
G102507 NA non-coding upstream 264872 1416261 ~ 1459547 (-)
G102519 NA non-coding upstream 366986 1518375 ~ 1518699 (-)
G102521 NA non-coding upstream 396427 1547816 ~ 1548095 (-)
AMCG00010806 NA other downstream 114560 1033830 ~ 1034874 (-)
G102434 NA other downstream 171307 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 999605 136369 ~ 149829 (-)
AMCG00010843 NA other upstream 1330485 2481874 ~ 2496446 (-)
G102762 NA other upstream 1588427 2739816 ~ 2778023 (-)
G102774 NA other upstream 1607089 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 2028581 3179970 ~ 3182619 (-)
G102990 NA other upstream 2169424 3320813 ~ 3419176 (-)

Expression


Co-expression Network