AMCG00010843


Basic Information

Item Value
gene id AMCG00010843
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2481874 ~ 2496446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010843
GCCGAGGAGCCGAGCCGTCCGGCACACAGCGCGTCCCTGAGCCCCGTCCGGGGGAGACGACGACAAAGAGACCCGGCATCGCTTCAGTCTCTCCGGGCAAGGACCGGCGCCACCGGCGACCTGGGGAGGAGACTCTGCGGGCTGAGGGCGGCTTCTCTCGGCGCCGCTGTGTGGAGCGCCGGGCCGGGCTGGAGAGCCTCTAACCCGGCACTGATGGTGGACGGGGGTGCCTGCGACATCACAACCCAAGAGCCGGACTGCAAACCTGCAATACAAGCGCACTGTCTGTTTCTCCGGCGAGGCGGGTTTGTGTGAGGACTGAAGCACagccaattaagtaattaattaattaaccgCCACCACGGGTTCTAATTACTGCAACGAGTCACTGTGCAGCGGAGTATGTCGACCAGAAACCCGGACTCACAGGTGTGGCCCCGGGACAGTTAATTAGACAGGTGTGGCCCCGGGACAGTTAATTACCAGACCCTAAATGCTGTAACTTACTGTCATCATTATAACAGTGAATCTGGGAGTCTTTTTATTGCTCTCTGGACTGCCTTGCCGTTTAGGTTTTAACTCCAGAAGGGACCCGCTTTATAAACCATGAAAAACTGCGAATATCAGCAGATCGACCCCCGGGCACTTTCCACTCCCGCTGCCACGCCCACGCCGCCGCCTGCCGGCCCCGGGTCCGAGAAGAGCGGCCCCCAGCGGCCCCGGAGGAAGTGGGAGGTGTTCCCGGGCCGGAACCGCTTCTACTGCGACGGGCGGATCATTGTGGCCCGGCAGAGCGGCGTGCTGCCCCTCACCCTGGGTCTCATCCTCGTCACCAGCGGCCTGTTCTTCATCTTCGACTGTCCATTCCTAGTGGAGCACCTGACCGCCTGCATCCCCGCCATCGGAGGGGCGCTCTTCCTCTTCGTCGTCGTCTCGCTCCTGCAGACCAGCTTCAGCGACCCGGGCATCCAGCCCCGCGCCACCCCCGACGAGGCGGCCGACATCGAGAAGCAGATCGACAGCTCAGGGTCCTCCACGTACCGCCCCCCCCCACGCACCCGAGAGATCGTCATCAACAACCAGGTGGTGAAGCTCAAGTACTGCTTCACCTGCAAGATGTTCCGCCCCCCCCGCACCTCGCACTGCAGCCTGTGTGACAACTGTGTTGAGCGCTTCGACCACCACTGCCCCTGGGTAGGCAACTGCGTGGGCAAACGAAACTACAGGTTCTTCTACTGCTTCGTGGTCTCGCTGTCCTTCCTCACGACCTTCATCTTCGGCTGCGTGATCACACACCTCACACTGCGCTCCCAGGGCGGGAACGGGCTGGTCCACGCCTTGCAGGAGAGGTTCCACACGTATCTCGTCGCCTCCAACCTCACCACCAACGAAGACATCAAAGGCTCCTGGTCAGGGAAGCGCGGGGCCGAGGACTCGGGGAACCCCTACAGCTACAACAACGTCTTCAGGAACTGCTGCGCGGTGCTCTGTGGCCCCATGCCCCCTAGCCTGATAGACCGCCGCGGCTTCTTGCCACCAGACAGCGCGCCCCCCGCTGCCCCCCCGGAGCCCGAGCTTCCGCCCTTCGTGGCCAAACACGACACCAACATGTGTACACAGGGCACTAAAGACCTCTGGGCGACGGCCGCCCGCTCGCCGCTCCTGACCGGCCCCTGCTCGCCCCGGAAGCTGAAGCCCACGCCTGAGCTCGGGGCCTGCCCTGCTGTCGGAGCCCCCGGTCCTgctgccctctccctctcgccGTCCCATTGCGCTGGGGGGGCGGGGAGGCTGGCACCCCCGAGGAGCAGCACAAGCCCACGCCCCTGCACCCCGATAAGAGCCGTGGCCCGCGTGCCCTGGGGCTCCCGGCTCCGTCTGCCTCCACTTTCCTTATCTGACGTGGGACTGAGTGGGCAGTGAAGCGAGTACTCCTCTTCCACCGCCTCTCGATGTGAAACCGTCACACAGGCCGTCCCGGGGCCCCCACGCTTGCCTGCTCATCGAAGACCACTGGTGTAGCTGGGGACCTTCTGTTTCTCAAAGAAGCCTGGGACCTTTTGTCTCGAGTGCTGGAGCACAGTGAAGTGATAATGGTGACCTACACTAATTCACGGGTTTGGCACTCAAGCGTCGTACATCCTGTAGCCTTACgcagggaggtggggggttgcCATCTCACTGCCCAGGTCCTCTCGTCTGCAGGAGAGCGGAGCGGGCGCGGCTCCGGCACCGAGACGGGTGGGGCTGGCGGAGGCCCGGGGGCAGGCCGGCGTGGAGCGGCTCTCATACCTAATCCCAGGATCACACCCTGTCCCGGCCCACaccttttctattatttattttttatttcttggcagacgcccttatccccTTTATAAGCACAAAGACGCGCACGCATAGATGTACACGTTTCTATAGATTCTCCCACTGGTGTTTGTTTCCAGTGGATGCAGAAAATGCCTTGAGCCATATTTTCTATCGCCGGGAAAAACTGTCACGCCCCGAGTCTGCGACGGACCCGAGGGCCCGTCCGTCTCGCAGCTGGCTTGTCCGGGTCTCTTCGCACAGCAATAACAGAGCAGCCCTGCAGAGAGCGTGCGTCGCAGCTCCTCGCCCCGCGGGAACGGGTCATGTAGTGAGACATCCTCCTGTCAAGTCACCTTACTTGTGTTCACGCGTTTTGATTCAATAAGTCCTGGACTGGGCTCCCTCTGCTGCTAGGACACGTTACTGCACAACCCTCCTCCTGCGTCGTTCTCCAGCACGGTCTTCCCTGGACAGCGGACGCTATACGGGCCTGCTGAATTTTGCCGTCCCCGTTCACGACCCTTCTAGACCCCGAGAGGTggtcaattaatttgttttcatgcatagtgtttgtttttcacggGAGATCCCTCCAGGGGACTTCAATATCTGTCCCGCCTCTGAAGGCCAGAGGTTTTAAAGGATTTTATCTTCATTTGGTGGTGTGCTGTGATTTTCCCCCCCGTGTGTGATTTGTGAAATCGGCCCAGATTTGCAGCCCACGCCTCGTTTGAGAGGCTTTACGGGAGGGTGTGGGATTAGACTGAGAGATCtacttattgttttatatacttGACTGAATGTGTGATTGACTGTATGCGTTTGGCGTTTTATTATAAGCCATTTCCATATCCCTCGCACCGATGATGTAGACTAACACTGACTACCTGACTAGACGACTTAGCGGCCCTTCAAACTAACACTGTCCTTTCACAGCATCACAGCAGTGTCGTCTGGCACACAGTAGCGTTGGGAGTTGGTGGCCGATTAACCATCAGCTTGATTTATTTGTTGGTCTGCCGAGTTTcctctttaaaatgcaaacttcACAGACTTGTCTTTCCACCCGAATAAGGTTTGCCAAAATCATTCCCAGCCCGATGCTGAGGAGCTGGTAAGtggattaaaaaggaaaagcaaataTGTGTGTtatgcttgtttattttgtgtgagtCCTAAGGACTTGCTGTATGAACCTTCATGCACCTCGCACAATAAACAAGAGGGG
>TU128213
ctcctcctctccctccagtAGTGTCTCCACACACAGGCAGCGGTGTCCAAGAGACGGGTCTGTCAGTGGGGCACAGTGGGGGCGGAGTCTTTCGTCCGGGGGCGCTGCTAGCTCGTGCCCCCAGTCTGCTCAGATCTGTGGGTCAGACGTCTCCCTCCGGGCGAGAGCTCTGTGTTGAGACCCCCGCGGACCGCAGAGGGCTGGACAGAGTGGGGTGGATAACGGTGACCCCCGCTGACGgatgtgaaagtgtttgtttacAGACTCATAACTCTAGTGTTcaattcatttctgttttatcaTCCTGTTCCTTAattcattattgtgtgtgttgtgtggtggAAAGTCTGAGGATGACttaattctgtttattatttcaaaacgtattttatttgcttctgAAGCATTTCATTCTTTAGTATTCTTATGATTAGTGGAAGAAAGGCGTCCCTGACAGGAATCGGGCTCGCCGCTCCCACTGGGATTTTCGTTACAAACATTTTGTTCAACCGAAGATGTAAACGACCCCAACGACGTCAGAGCAGCCAGTCTGAGATTTATTCACCCACTACAGTGTGAAACCCTCTCAGAGCGAACGGCGGCCAACGCACAGAGCGCGGATGACTCCCTCCACACAGACGcggcctaaaaaaaaaaaaaaacggaaagaCTGGACTGCGTGTCCCGGCTGTGAGAGATGAGAGATGGACCTCTGGTTTGGTTTTGAGTTTGGTTCTGGTTCAGACGCCTCTTCTCTCTGACAGCAGAGACGAGACTGAGTCACTGGGGTCCGAGGTCGTTAAATTCTCCCTTTTCAATCTGCAGTTCCTGAAACTACAAACTTCCtcttgtttacatttaaatgtatataatgtgacaGTGTTTAATCTTGGCTAAACTTTGCTCGTCTGCCTCAATTGTCAATCTTACAAttgtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggatcTGCAAAACCACTTTCACATAAAGTAAATGCACCACAAAAAGAGGCAACAAAATACCTCGCGGAAAATGACTTGACTGTAAGTTGTGTACGGCTTGACTGTACAGCTCTGGTTGGCTGTGGTGTCGGGTGTTCATTACTGCATTGTTTTGGGTGGAATGACCGGGAGAAATTGAGTCTGTAGAGAGGTGGACTATAAAACATTCTGGGCCTGATTTAATTAGAAGAATACCAGGGTAGTTTATCCAGCTCTACCGAAGCGCTCCGGAGACGGCCTGTGGGGAAGCCTCGTCTGCGTCTTTTCTACAGAACACGGTGTCCTATAGGAGATGACTCCGTTCGGTTGAAGGGCACCTACGCAATGTCCGTGAACGTCAATCTCACGTCTCCTTCGTCTTATGTTCTCTCTCTGGCCTGGGATGGAAATGTTTCTGAATATCAGTTACACAACTGCCGAACACAACCCTGAACTTCACACAAGGGTGACACAGTCTTGCGGCCTCAGTGGTGCGATTACAACAGTCTGGGCCCTGTCCTGCCTCGGGATCAGTTTGACAGCAGGCGTGGACGTCTCCCTCGTGCAGCAGAAGATCAGTTGTGAAAAAGACGGTGCCACTCTGAGCTGGACCGGCCTGGACCGCCGCACAAACAGCCCTCCTCTGTCTACCTCACCATAAGGCTGGCCTCAGAGGGAGTGAGTGGGGTGCAGATTCTGCCCGTCTGAAGGAAAGGGCTCATCtgatgtgttatttttgtgtctCTGTTCCACACGACGGGAGGCGTGCAGAGGAAGCCAAGGTTCGGCGGTCGTTGGCTTCCCCTGCAGCTGTCGTGGTTTTCGTCTTGCGACCTTTTCGCCCAGAGATTTCATTAGCAAGGCAAATAAAGCGCGAAGAAGACAACTTCCCTACTGCCCGGGGGAACGGCGGTTATTTAGGAGACATTCTGCAGGGCGGGAGGGTTGATACGGGTTAAAAGAAGACGGAAGGAATCCCTCCGTTACTCGACAAGGCACATTCTGCTCACGGTCCCGGACAGACGAAGACACGTCGatagcattttgtttctgtgtctcgTCGTTGTCGTTGAGACCGTTGAGACCATTCTCAGGGTTCAGTCCTTTCATGTGATGTAGAGAAACTATTTTTTATACAGGAAAGTGTAAATCTACTCCCCGCAACATCCCCTTTTCTGTCCTCACTGCATGGCTCATATTGTCACATCTGTTCCCGTTTAAACTGGCCTCATTTGCATTTGGCTTCGCCTTAAAGTGTTGCTGCTCATCGTTGTTGCCGAATAGCATGTTTCAAAATcggctttatttttgttttgccttttaatgtcaaaataaaacGTTCTGAAATCCCACagcatgtttattttccctttacCCCCCTACTGTTTTTTTAcctctcttttttgtttgctttgtttggttttgaaagCCAAACGTGTGACTGGAGGTTACTTTTGTTTAGATCTGTGGATGCGGCTCAGCCCTTCGAGAGACAGTGGCTGGTTTTCTGCTCCGTCCATGTGACGGGACGTTTGCAGAAAGACACTTGCTGGGGAAATAGAGACGGGTGGAAAGTGCGTTTGTTGTTTATAGTGTTACTTTATGAGAACTGTCCTCTCTGGTGCGCTCCTGCTTCTTCCTTGTGTTTGTTAACTTCCGAGTTTGATCACCTGGCTTCACTGACCTCTGTGTGGAGCAGAGTGTTTATTAATCAGGGGTTTTAGTCCTGCCAATGGGATGTTCATCTTTTCTGGGTTTgtgctgcgtgtgtgtgttactgttgtATGTTTGGAGATtgttggggtgtgtgtgttaatgttatATCCTGTGAGATTgttgggttgtgtgtgtgcgtgtgtttgtgttaaatacTTTGAGATTGTCTGCTTGTTTGTGAGTGTTTGTTAGTATTATATGCTTTGAGATTGTTGGCtggcgtgtgcgtgtgtgtgtgtgtgggtatgttTGGCTAATCTCTGGGGGTGATTAACGTGTGGCTCTTGTGGTGTCCCCTGTAGGAGGAGAATTGTCAGGATTTCGCTCTGTCTTGCACAGCCTGATGTGGTAGTTGACATTATTAGCCCGTGCCGCTGTCGGAGGGGAGCCGTGTACACAGGGCACTAAAGACCTCTGGGCGACGGCCGCCCGCTCGCCGCTCCTGACCGGCCCCTGCTCGCCCCGGAAGCTGAAGCCCACGCCTGAGCTCGGGGCCTGCCCTGCTGTCGGAGCCCCCGGTCCTgctgccctctccctctcgccGTCCCATTGCGCTGGGGGGGCGGGGAGGCTGGCACCCCCGAGGAGCAGCACAAGCCCACGCCCCTGCACCCCGATAAGAGCCGTGGCCCGCGTGCCCTGGGGCTCCCGGCTCCGTCTGCCTCCACTTTCCTTATCTGACGTGGGACTGAGTGGGCAGTGAAGCGAGTACTCCTCTTCCACCGCCTCTCGATGTGAAACCGTCACACAGGCCGTCCCGGGGCCCCCACGCTTGCCTGCTCATCGAAGACCACTGGTGTAGCTGGGGACCTTCTGTTTCTCAAAGAAGCCTGGGACCTTTTGTCTCGAGTGCTGGAGCACAGTGAAGTGATAATGGTGACCTACACTAATTCACGGGTTTGGCACTCAAGCGTCGTACATCCTGTAGCCTTACgcagggaggtggggggttgcCATCTCACTGCCCAGGTCCTCTCGTCTGCAGGAGAGCGGAGCGGGCGCGGCTCCGGCACCGAGACGGGTGGGGCTGGCGGAGGCCCGGGGGCAGGCCGGCGTGGAGCGGCTCTCATACCTAATCCCAGGATCACACCCTGTCCCGGCCCACaccttttctattatttattttttatttcttggcagacgcccttatccccTTTATAAGCACAAAGACGCGCACGCATAGATGTACACGTTTCTATAGATTCTCCCACTGGTGTTTGTTTCCAGTGGATGCAGAAAATGCCTTGAGCCATATTTTCTATCGCCGGGAAAAACTGTCACGCCCCGAGTCTGCGACGGACCCGAGGGCCCGTCCGTCTCGCAGCTGGCTTGTCCGGGTCTCTTCGCACAGCAATAACAGAGCAGCCCTGCAGAGAGCGTGCGTCGCAGCTCCTCGCCCCGCGGGAACGGGTCATGTAGTGAGACATCCTCCTGTCAAGTCACCTTACTTGTGTTCACGCGTTTTGATTCAATAAGTCCTGGACTGGGCTCCCTCTGCTGCTAGGACACGTTACTGCACAACCCTCCTCCTGCGTCGTTCTCCAGCACGGTCTTCCCTGGACAGCGGACGCTATACGGGCCTGCTGAATTTTGCCGTCCCCGTTCACGACCCTTCTAGACCCCGAGAGGTggtcaattaatttgttttcatgcatagtgtttgtttttcacggGAGATCCCTCCAGGGGACTTCAATATCTGTCCCGCCTCTGAAGGCCAGAGGTTTTAAAGGATTTTATCTTCATTTGGTGGTGTGCTGTGATTTTCCCCCCCGTGTGTGATTTGTGAAATCGGCCCAGATTTGCAGCCCACGCCTCGTTTGAGAGGCTTTACGGGAGGGTGTGGGATTAGACTGAGAGATCtacttattgttttatatacttGACTGAATGTGTGATTGACTGTATGCGTTTGGCGTTTTATTATAAGCCATTTCCATATCCCTCGCACCGATGATGTAGACTAACACTGACTACCTGACTAGACGACTTAGCGGCCCTTCAAACTAACACTGTCCTTTCACAGCATCACAGCAGTGTCGTCTGGCACACAGTAGCGTTGGGAGTTGGTGGCCGATTAACCATCAGCTTGATTTATTTGTTGGTCTGCCGAGTTTcctctttaaaatgcaaacttcACAGACTTGTCTTTCCACCCGAATAAGGTTTGCCAAAATCATTCCCAGCCCGATGCTGAGGAGCTGGTAAGtggattaaaaaggaaaagcaaataTGTGTGTtatgcttgtttattttgtgtgagtCCTAAGGACTTGCTGTATGAACCTTCATGCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010843 False 3538 mRNA 0.58 9 2481874 2496446
TU128213 True 4999 lncRNA 0.51 2 2481897 2488417

Neighbor

gene id symbol gene type direction distance location
AMCG00010841 fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733 coding downstream 32320 2442227 ~ 2449554 (-)
AMCG00010839 NA coding downstream 99629 2365473 ~ 2382245 (-)
AMCG00010840 NA coding downstream 145131 2332216 ~ 2336743 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding downstream 299402 2180504 ~ 2182472 (-)
AMCG00010836 NA coding downstream 301377 2143118 ~ 2180497 (-)
AMCG00010842 NA coding upstream 3359 2499805 ~ 2502500 (-)
AMCG00010844 arid1a,LOC106588635 coding upstream 10274 2506720 ~ 2519791 (-)
AMCG00010845 NA coding upstream 40752 2537198 ~ 2539438 (-)
AMCG00010852 gpn2 coding upstream 123515 2619961 ~ 2623328 (-)
AMCG00010850 NA coding upstream 128557 2625003 ~ 2628517 (-)
G102651 NA non-coding downstream 44176 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 118764 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 164610 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 229407 2252119 ~ 2252467 (-)
G102615 NA non-coding downstream 304358 2177276 ~ 2177516 (-)
G102725 NA non-coding upstream 178117 2674563 ~ 2675136 (-)
G102785 NA non-coding upstream 293024 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 458314 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 494201 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 648818 3145264 ~ 3145687 (-)
AMCG00010806 NA other downstream 1447000 1033830 ~ 1034874 (-)
G102434 NA other downstream 1503747 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2332045 136369 ~ 149829 (-)
G102762 NA other upstream 243370 2739816 ~ 2778023 (-)
G102774 NA other upstream 262032 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 683524 3179970 ~ 3182619 (-)
G102990 NA other upstream 824367 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 824930 3321376 ~ 3327559 (-)

Expression


Co-expression Network