AMCG00010841 (fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733)


Basic Information

Item Value
gene id AMCG00010841
gene name fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2442227 ~ 2449554 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010841
ATGTCCTCCGGCGATGCGGCGGAGCAGAGTCGGCGCTTCAGCGTGCTGTCCTGGGAGCAGGTGCAGCGCTTGGACTCCATCCTCGGCGAGACTGTGCCCATCCACGGACGGGGCAACTTCCCCACGCTGTCCGTGCTGCCCCGGCAGATCGTGCAGGTGGTGCGGAACCGTCTGGAGGAGAAGGGGATTCCCGTGCGAGATGTCAAGCTCAACGGCTCGGCCGCAAGTCACGTGCTGCACCAGGACAGCGGCCTGGGCTACAAGGACCTGGACCTGATCTTCGGCCTGGAGCTGCCTACGGACCGTGAGTTCCGCCAGGTCAAGGACGTGGTGCTGGACTGCCTGCTGGACTTCCTGCCGGCAGGCAGCTTCCACCCCACCGTGCTGGGCGAGAGCATGTACGGCGACTTCGAGGAGGCGCTGGGCCACCTGCGGCGCCAGACCATCGCCACGCGCAGCCCTGAGGAGATCCGCGGGGGGGGGCTGCTCAAGTACTGCAACCTGCTGGTGCGCGGCTTCCGGGCCGGCTCGGAGCAGGAGATGAAGTGCCTGCAGCGTTACATGTGCTCCCGCTTCTTCATCGACTTCCCCGACATCGGCGAGCAGCAGCGCAAGCTTGAGGCCTACCTGCAGAACCACTTTGTGGGCATGGAGCACAGACGCTACGACTACCTGGTGACGCTGCACCGCGTGGTGAACGAGAGCACGGTGTGCCTCATGGGCCACGAGCGGAGGCAGACGCTCAACCTCATCTCCATGCTGGCGCTGCGGGTGCTGGCCGAGCAGAACATTATCCCCACGGTCACCAACGTCACCTGCTACTACCAGCCGGCGCCGTATGTGCGCGACATCAACTTCAACAACTACTACATCGCGCACGTGCAGCCCCTGGTGCCGGCCTGCAGTAACTCTTACCAGACGTGGCTGCCCTGCAACTGA

Function

NR:

description
uncharacterized protein LOC777768

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010841 True 939 mRNA 0.65 3 2442227 2449554

Neighbor

gene id symbol gene type direction distance location
AMCG00010839 NA coding downstream 59982 2365473 ~ 2382245 (-)
AMCG00010840 NA coding downstream 105484 2332216 ~ 2336743 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding downstream 259755 2180504 ~ 2182472 (-)
AMCG00010836 NA coding downstream 261730 2143118 ~ 2180497 (-)
AMCG00010827 pkib,LOC105417165,LOC107098269,LOC107374466 coding downstream 605342 1821651 ~ 1836885 (-)
AMCG00010842 NA coding upstream 50251 2499805 ~ 2502500 (-)
AMCG00010844 arid1a,LOC106588635 coding upstream 57166 2506720 ~ 2519791 (-)
AMCG00010845 NA coding upstream 87644 2537198 ~ 2539438 (-)
AMCG00010852 gpn2 coding upstream 170407 2619961 ~ 2623328 (-)
AMCG00010850 NA coding upstream 175449 2625003 ~ 2628517 (-)
G102651 NA non-coding downstream 4529 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 79117 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 124963 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 189760 2252119 ~ 2252467 (-)
G102615 NA non-coding downstream 264711 2177276 ~ 2177516 (-)
G102725 NA non-coding upstream 225009 2674563 ~ 2675136 (-)
G102785 NA non-coding upstream 339916 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 505206 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 541093 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 695710 3145264 ~ 3145687 (-)
AMCG00010806 NA other downstream 1407353 1033830 ~ 1034874 (-)
G102434 NA other downstream 1464100 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2292398 136369 ~ 149829 (-)
AMCG00010843 NA other upstream 32320 2481874 ~ 2496446 (-)
G102762 NA other upstream 290262 2739816 ~ 2778023 (-)
G102774 NA other upstream 308924 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 730416 3179970 ~ 3182619 (-)
G102990 NA other upstream 871259 3320813 ~ 3419176 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009655 TENT5A coding NC_007127.7 CM002900.2 4907690 ~ 4913970 (+)
grasscarp (Ctenopharyngodon idella) CI01000065_04247989_04251347 FAM46A.L, FAM46AB, FAM46A, FAM46AA coding CI01000065 null 4245663 ~ 4251797 (+)