AMCG00010842


Basic Information

Item Value
gene id AMCG00010842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2499805 ~ 2502500 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010842
GCTGAAGGCGTTGCGTCATACGTAAACAGGAAGTGCGCTGAGTGGCCTTCATTGCAGCCGGCAGGGAGGCGTTGTAACTATTAATCGTCATTATTACAGGCTGAAATGGTGCCGGCATTGCCGAGCTGATGTGTGTTTCACCGCAGAAAGCGGAACAAATGCCTCTGAAGTTTCTGCAAACTGGCAAACGTGTATCGACGTCCGGGCGCCGCGCCGCGGGAGACCGGGGCGAATGAAgcaaaggCGGTTGGTGTGACGCTGGTCCACGCAGGACGCGCAGCCGGTCCCGTGTGAGGCGCGGATGGACGTGCGCAGCGTGGCGCGGTTCGGCCTCTTCTCCAGAGCGCTGGCCCTGGCGCTGCAGGCCGTGTTCAACGCACTGATCCCGGACCACCAGCCGGACGCGTTCAGCCCCCCGCGGGCGTCGGAGCCGCAGCTGCTGGACTCGGTGGTGGAGGGCCTGCTGGGGGGTCTGTCTCGCTGGGACGCCGAGCACTTCCTCTTCATCGCCGAGCGCGGCTATCTGTATGAGCACAACTTCGCCTTCTTCCCCCTGCTGCCGCTGAGCCTGCGGGCCGTGGCGGGCGCGTTGCTGTGGCCCCTGGCCGGCTGGCTGAGTGTGCGGAGCCGGCTGCTGCTGGCCGTGGCGCTGGTGAACGGGCTGCTGGGCGTGCTGGGCGCCGTGGCTCTGTACGGACTGGGCCGCGTGGTGACGCAGGACCGCCGCCTCGCCTACTACGCCAGCCTGCTGTTCTGCCTCACGCCGGCCAGCGTCTTCATGGCGGCCGGCTACTCCGAGAGCCTGTTCGCCAGCTTGGCGTTCGGGGGCATGTGGCTGCTGGAGAGGGGCCGCACCCTGAGCGGCTGTGGGGTCCTGGCCCTGGCCACCGCCGCCCGCTCCAACGGCGTGGTCAACGTGGGCTTCCTGCTCTacctgcagctgcagcaggcGCTGGGCCGGGCCCAGCTGCTGCGAGGGACGCCCTGGGGGGTCTGCAGGGGCCTCCGCTACGCCGGCATCGCAGTCTGCTTCCTCCTGAAGGCGGCGCTGGGGAGCTCCGCCATCCTCCTGCCCTTTGGTCTCTTCCAGTACTACGGCTACCGGACCTTCTGCACTCCCACCATCGGACCGGAGCAGATTTCCCCGGCTCTGCTCGAGCTGGCGGAGCTGAAAGGTTACCGCATCCCTGACACGACTAAAGCCCCCCCCGCCTGGTGCCAGTGGCCGTTCCCAGTCCTGTACTCCTACATACAGGACGTCTACTGGGATGTGGGCTTCCTCAGGTACTTCCAGCTCAAGCAGCTGCCCAACTTCCTGCTGGCGCtgccggtgactgtgctgggcGGCACGGCAGCCTGGCAGTACTTCCGTGCCGATCCCTGGCTGTGTTTGCAGCTGGGCCTCCTGGGAGAGCCGCTGAGGAAGCGCGGAAGAGCAGAGGGGGACCGGCCTGCCGCTGGGTTCCGCCACCCCCGCGTGTTTGTGTACGTGGTCCACGCCTCGGTGCTGCTGGTGTTCGGGGGCCTGTGGATGCATGTGCAGGTGCTCACCAGGTTCCTGGCCTCCTCCTCCCCGGTCCTGTACTGGTACTGCGCTCACCTGCTCGACAAGAATGAGCCCTGGCTCCGTGCCCCGAGAGACGGCGGCTGTGAGGGGGAGTGTGCGGCCCCGGGGCGGCCCTGTGTTCGGTGCCGGACTGGCGCCGTGTGGAAGGGCCTCCCCAGGAACCCCCTCACACGGCTGCTGTGCCACTGGGGGGCCTGCTCTCCCGTCAGCCGCTGTGTGCTCGGCTACTTCACCTCCTACTGGCTGCTGGGCCTGGCTCTGCACTGCAACTTCCTTCCCTGGACCTGAGGGGGTTCAGGCCCGCAGAGGAGAAGACGAGACTCGCCTCCGAAGCCATGGCGAGGGTGTCCGTCCTTCACGCGGCGCTGCCCCTGCTGGAGACCCGGTGTCGCCCCCCGCGCGGTCTCGTGATCCTCCACAGACCTGCCACGCGCCCACACGCTGGATCGGGCTCCCCCAGCCGTCACTCTGAAAGTGCGGCGGACCCCCTGCCCCGGGCTGCCCTCCCGCACTGACGGGCCTGCACTGAGCGACAGCATGCAGCACGACTACTACACAACCACTACTGCACTAAGATGCGCTGTCAACACCAGCActgctctctgtgctgtgcaCGACTCGGGGACGAGGGGTTGTAACACGGCTgcgaaataaaaacacaaagaacgTTTGAAATGCCTCTGATGCTTTATATTCACCCAACAATCTGCAC

Function

GO: NA

KEGG:

id description
K07542 PIGV; GPI mannosyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010842 True 2279 mRNA 0.66 4 2499805 2502500

Neighbor

gene id symbol gene type direction distance location
AMCG00010841 fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733 coding downstream 50251 2442227 ~ 2449554 (-)
AMCG00010839 NA coding downstream 117560 2365473 ~ 2382245 (-)
AMCG00010840 NA coding downstream 163062 2332216 ~ 2336743 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding downstream 317333 2180504 ~ 2182472 (-)
AMCG00010836 NA coding downstream 319308 2143118 ~ 2180497 (-)
AMCG00010844 arid1a,LOC106588635 coding upstream 4220 2506720 ~ 2519791 (-)
AMCG00010845 NA coding upstream 34698 2537198 ~ 2539438 (-)
AMCG00010852 gpn2 coding upstream 117461 2619961 ~ 2623328 (-)
AMCG00010850 NA coding upstream 122503 2625003 ~ 2628517 (-)
AMCG00010849 nudc,LOC107737783,LOC107580217,LOC104951062 coding upstream 127974 2630474 ~ 2638055 (-)
G102651 NA non-coding downstream 62107 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 136695 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 182541 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 247338 2252119 ~ 2252467 (-)
G102615 NA non-coding downstream 322289 2177276 ~ 2177516 (-)
G102725 NA non-coding upstream 172063 2674563 ~ 2675136 (-)
G102785 NA non-coding upstream 286970 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 452260 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 488147 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 642764 3145264 ~ 3145687 (-)
AMCG00010843 NA other downstream 3359 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1464931 1033830 ~ 1034874 (-)
G102434 NA other downstream 1521678 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2349976 136369 ~ 149829 (-)
G102762 NA other upstream 237316 2739816 ~ 2778023 (-)
G102774 NA other upstream 255978 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 677470 3179970 ~ 3182619 (-)
G102990 NA other upstream 818313 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 818876 3321376 ~ 3327559 (-)

Expression


Co-expression Network