AMCG00010849 (nudc,LOC107737783,LOC107580217,LOC104951062)


Basic Information

Item Value
gene id AMCG00010849
gene name nudc,LOC107737783,LOC107580217,LOC104951062
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2630474 ~ 2638055 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010849
CGCGCGGCAGGTAACGGGAGGCGGTGCTTGTTTCCAGGAAGCGCGGCGGTGCGGGAGGCAGCGTGACTCCACATTTACTGCACTTCGCGCTTCGGTTCTCGGGCGGTTTTTCACTCACCATGGCCGAGGAAGAGGAGAAGTATGACGGCATGCTGCTGGTTATGGCACAACAGCACGAAGGCGGCGTGCAGGAGctgGTGAACACCTTCTTCAGTTTCTTGAGACGCAAAACAGATTTCTTCACCGGAGGAGAGCAGGGGGCACCGGAGAAGcTGGTGAAGGAGTCGTTCGCGCACCACAATCAGCTGGCTCTGAAGGCCCAGCGAGAGAAGCTGGCCAAGCGGGAGAAGGAGCAGCGGGCAGCCAAGCTGgccgaggaggaggagcaggagaagaaGAAGGCCAAAAAGAGCGCGGAGGAGAGCGAGCCCAAAATCAAGGAGCTGACGGACGAGGAGGCGGAGCTTCTGCAGTCGGAGATCAACCAGAAGAAAGAAGACGCAAAGAAAGAGGAGATTGCCGTCCAGCCCAACACAGAGATGTCCTCTGAGAAGACGCAGGACAAGGGTTCCGAGTCGGAAGGGGAGGAGGACGAGAAGGACAAAGGCAAGCTGAAGCCCAACGGGGGCAACGGAGCCGACCTTCCGAACTACAGGTGGACGCAGTCTCTGTCCGAAGTGGATCTGCTGGTGCCCTTCGATGTGCAGTTCCGCATGAAAGGCAAGGACGTGGTGGTGGACGTGCAGAGGCGGCACCTCAAGGTGGGCCTGAAGGGCCACCCGCCGGTCATCGACGCCGAACTGTACAACGAGGTGAAGGTGGAGGAGAGCTCCTGGCTCATCGAGGACGGCAAGGTGGTCACCGTCCACCTGGAGAAGATTAACAAGATGGAGTGGTGGAGCAAGATCATCACCACCGACCCGGAGCTCAACACCAAGAAGATCTGCCCCGAGAACTCCAAGCTGTCTGATTTGGACGGGGAGACGCGCAGCATGGTGGAGAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGCCTGCCCACCTCCGATGAGCAGAAGAAACAAGACATTCTGAAGAAGTTTATGGCCCAGCACCCAGAGATGGATTTCTCCAAAGCCAAGTTCAGCTGAGTGCCTCTCGTCAGGAACCGCTCCTCTGTCTCGACGGTTGTGTGTCAGACCTTAGGAAAATGTTCATCAACTACCAATGCAGACTCTCTCTTCGCCTGTAGTGTGCGGTTTCTTTTGTCTGCCCATTTTGTCCCACATCCCTAggttcaactttttttttttttttttatcattcttATTTAACCGGTTCTGTTAATGTTCCCGATCTGACGTTACCAATGcaaaggtttgtgtgtgtgtttgttttttaaataaagccgTTTTCAAACCTCACTGACGTCGCCTCGTTGTGTGGCGGTCTCTTGCTGTGCTGTGGTCTGGTGGGTCTGGATGACGGATTATATCACCGCCGCCtcgtgtgtgagagtgtgagtgcgtCTCTCTTCTGTCTGTTCCATCATAAAGCTGGGGTGAAG

Function

symbol description
nudc Predicted to enable unfolded protein binding activity. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in microtubule. Predicted to be active in cytoplasm. Orthologous to human NUDC (nuclear distribution C, dynein complex regulator).

NR:

description
PREDICTED: nuclear migration protein nudC isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010849 True 1549 mRNA 0.55 9 2630474 2638055

Neighbor

gene id symbol gene type direction distance location
AMCG00010850 NA coding downstream 1957 2625003 ~ 2628517 (-)
AMCG00010852 gpn2 coding downstream 7146 2619961 ~ 2623328 (-)
AMCG00010845 NA coding downstream 91036 2537198 ~ 2539438 (-)
AMCG00010844 arid1a,LOC106588635 coding downstream 110683 2506720 ~ 2519791 (-)
AMCG00010842 NA coding downstream 127974 2499805 ~ 2502500 (-)
AMCG00010848 NA coding upstream 11206 2649261 ~ 2661858 (-)
AMCG00010851 NA coding upstream 49011 2687066 ~ 2689410 (-)
AMCG00010857 tmem222,LOC103368846,LOC106570241 coding upstream 56350 2694405 ~ 2706621 (-)
AMCG00010858 wdtc1,LOC106605082,LOC106583467 coding upstream 74472 2712527 ~ 2723800 (-)
AMCG00010859 NA coding upstream 124471 2762526 ~ 2767269 (-)
G102651 NA non-coding downstream 192776 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 267364 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 313210 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 378007 2252119 ~ 2252467 (-)
G102615 NA non-coding downstream 452958 2177276 ~ 2177516 (-)
G102725 NA non-coding upstream 36508 2674563 ~ 2675136 (-)
G102785 NA non-coding upstream 151415 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 316705 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 352592 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 507209 3145264 ~ 3145687 (-)
AMCG00010843 NA other downstream 134028 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1595600 1033830 ~ 1034874 (-)
G102434 NA other downstream 1652347 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2480645 136369 ~ 149829 (-)
G102762 NA other upstream 101761 2739816 ~ 2778023 (-)
G102774 NA other upstream 120423 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 541915 3179970 ~ 3182619 (-)
G102990 NA other upstream 682758 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 683321 3321376 ~ 3327559 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G195503 nudc,LOC107689540,LOC107700719,LOC102785895 non-coding NC_035919.1 CM008322.1 6326771 ~ 6430564 (+)