AMCG00010844 (arid1a,LOC106588635)


Basic Information

Item Value
gene id AMCG00010844
gene name arid1a,LOC106588635
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2506720 ~ 2519791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010844
ATGGGAAATGTACTCGCAGGCTATCACAATGGCAGggcttttctccctctccctcggcTGACCCCCATCTCCCATCTCGCTCTCCAGGATCTGTCGGGCTCCATCGATGACCTGCCCACCGGCACCGAGGGCGCCCTGAGCCCGGGAGTGAGTACCTCAGGAGTGTCCAGCAGCCAGGGGGAGCAGAGCAACCCGGCCCAGTCTCCCTTCTCCCCACATACCTCCCCCCACCTGCCGGGCATCCGCGGGCCGTCGCCCTCCCCAGTGGGCTCCCCCGCCAGTGTCACCCAGTCCCGCTCAGGACCCCTATCCCCGGCAGCTGTACCAGGGAATCAGATGCCCCCCCGACCTCCGAGTGGGCAGTCGGACAACATCCTGCACCCTTCCATCAACCAGACTGCCATGGGCCAAGACAGAGTGTACATGCAGAGAAACCCCCAGATGCCTGCCTACGGCTCCCCACAGCCTGGCTCCGCCTTATCTCCACGCCAGTCCTCAGGAGGCCAGATGCATGCTGGGATGGGGCCTTATCAGCAGAACAACTCCATGGGCAACTACGGGCCTCAGGGTGGCCAGTACGGGCCGCAAGCTTATTCCAGGCAGCCAAACTACACTGGCATGCCCAGCACCAACTACCCCGGGCCTGGTATGGGTGGCTCAATGAACCCCATGCCGGGGCAGGGCGGTGGGCCGCCATATACGGGAATGCCCCCGGGTAGGATGGGCCCTGGACAGATGGGCGCCCGGCCCTATGGCCCCAACATGGGCCCTAACATGGGCCCCAACATGGGCAACATGCCCCCTCAGGTGGGCTCAGGGATGTGTCCTCCCCCCGCCGGGCTGAACCGGAAGGCCCaggaggcggcggcggcggcgatGCATGCGGCAGCCAATTCGATACAGAACAGGCCGCCTGGCTACCCCAACATGACCCAGGCTGGCATGATGGCTGCCGGCTCCCCCTATGGGCAGAGTATGAACAGCATGCCTGGGATGATGAACCCCCAGGGACCCCCGTACCCCATGGGTGGCAACATGGCCAACAACACTGCTGGGATGGCTCCCAGTCCTGAGTTAATGGGTCTTGATGTGAAATTAAACCCGGCCcagaaaatgaataacaaaGCAGATGGGACTCCCAAACCTGAAACGAAGTCGAAGaaGTCCAGCTCTTCCACGACGACCAACGAGAAGATCACCAAGCTGTACGAGCTGGGCCCTGAGCCCGAGAGGAAGATGTGGGTGGACCGGTACCTGGCCTTCACCGAGGAGAAGGCCATGGGCATGAACAACCTGCCTGCCGTGGGCCGCAAGCCCCTGGACCTCTTCCGGCTTTACGTGTCGGTGAAGGAGATCGGAGGCCTCACACAGGTGAACAAGAATAAGAAGTGGCGCGAGCTGGCGACCAACCTGAACGTGGGCACCTCCAGCAGCGCCGCCAGCTCTCTGAAGAAGCAGTACATCCAGTGCCTGTACGCCTTCGAGTGCAAGATCGAGCGCGGCGAGGACCCGCCCCCAGACATATTCTCTGCTGCCGACGCCAAAAAGAACCAGCCCAAGATCCAGCCTCCTTCCCCAGCCGGATCCGGGTCTCTGCAAGGCCCCCAGACACCCCAGTCGACCAGCAGCTCAATGGCAGAGGGAGGAGACCTGAAGCCCCCGACTCCAGCTTCCACACCACACAGCCAGATGCCCCCCATGCCCGGAGTCAGGAGTAGTGTGGTGAGTCTGCAGGACCCCTTCGCGGACGGAGGTGACCCGGCATTCCCCCGGCGCAATTCCATGACTCCCAACTCGGGATACCAGGCAGGCATGAGCACTCCAGACATGATGGGCCGCATGCCCTACGAACCCAACAAGGACCCCTTTGGCACCATGCGGAAAGCGGGGGAGCAGTTCATGTCTCCGGGACAGGGACCCAACAGTGGCATGGCCGAGCAGTACAGCCGCGCGCCGCCGGGCTCCATGGGCAACATGGCGATGAGCCAGCGGCAGCAGTACCCCTATGGACCGGGCTACGATCGGAGACAGGAGCCGGGGATGGGCCCTGAGGGCACGATGGGGCCCGGAGCGCCGCAGCCAAACCTGATGCCTTCCAACGCCGACACGGGGATGTACTCGCCAAACCGCTACCCTCCACAGCAGCAGCGGCACGATTCCTATGGTAATCAGTACCCTGGCCAAGGTGCGCCCCCCGGCGGCCCCTACCCCAATCAGCAGCCGGGAATGTATGCACAGCAGCAGCCGAACTACAAGCGCCCGGTGGATGGCGGCTACGGACCCCCGGCGAAGCGGCACGAGGGCGACATCTACAATGTCCCGTTCGGCGGGCAGCAGCCACAGACGCAGCCACCCAGCGCCCCGCCGGGCCAGCAGGACATGTACAACCAGTATGCCAACGCCTACCCCGGCTCGGAGCGGCGGCCCCCGGGACCCCAGAACCAGTTCCCCTTCCAGTTTGGCCGGGAGCGGGTCCAGGCCACCACGGGGCCCAACTCCCAGCAGTCCATGCCCGCGCAGATGATGGGCAGCCCCATGCAGTCCACCCCAGACGGGCCCCAAGGCAGCATCTGGCAGAGCCGCAATGAGATGGGCTACAACTTTCCGAACCGGCAAGGCCCCGGGGCCCCCGCCCAGGGCGCAGGCTACCACGGCATCAACCGCTCCGAGGAGATGATGCCCGCTGACCAGAGGATGAACCATGAGGGGCAGTGGCCCGCACACGTCAACCAGCGGCAGCCCCCCTATGGCCCCTCGGGCTCTGTGCCCCCCATGACTCGGCCCCTGCAGCCCAACTACCAGACGCCCCCCGCCATGCAGAACCACATTCCGCAGGTCTCCAGCCCTGCCCCCCTGCCACGGCCCATCGAGAACCGCACGTCCCCCAGCAAGTCGCCCTTCATGCATTCGGGCATCAAGATGCAGAAAGCCGGGCCCCCGGTGCCCGCCTCACACATCGCCCCTGCGCCCGTGCAGCCACCGCTGATCCGGCGAGACATCACCTTCCCACCCGGCTCCGTCGAGGCGTCGCAGCCCATCCTCAAGCCCCGCCGGCGGCTCACCATGAAAGACATTGGCACCCCCGAGGCCTGGCGCGTCATGATGTCTCTGAAGTCTGGCTTGCTGGCGGAGAGCACCTGGGCCCTGGACACCATCAACATCCTACTGTATGACGACAACAGCATCTCTACCTTCAACCTCTGCCAGCTTCCTGGCTTCCTGGAGCTGCTGGTGGAGTACTTCCGACGCTGCCTCATCGAGATCTTCGGGATCCTCAAAGAGTACGAGGTGGGGGACCCAGGCCAGAGGACCCTGCTGGACCCCGAGGGCCTGTCCAGCGACCGAGACTCTGGCTCGGACGAGGAGGAGGACGCGGACGACGTGGAGGACATGGAGGAGGATGACGAGGACGAAGAAGATGACCCACCCGACGTGtctgagcagcagcagcttccGCAGCCCCAGCAGCCGCCGCCCCCGGCGCCGCCGCAGCAGCCCGCCCCAGAGAAGCCACATGGAGAGCCACAGCAGGAGCGGGAAAGagctggggaggaggaggaggaggaagaagaggaggaggagcaggagggggaGTCCGCAGCCAAGGAGCCCCGCCCTGCCACGCCTGCCCTGGACCCCAGCGCCCCCCAGGAGAAGCCCAAGCAGGCCAGCAAGTTCGACAAGCTGCCCATCAAGATGGTGCGCAAGAAGGACCCGTTCGTGGTGGACTGCTCCGACAAGCTGGGCCGGCTGCAGGAGTTCGACAGCGGGCTGCTGCACTGGCGCATCGGTGGCGGCGACACCACGGAGCACATCCAGACCCACTTCGAGAGCCGAGTCGACCTGCTGCAGCCTCGGAAGCGGGCGCCCGCCGCTCCAGGGGGCGCCGGAGGCCGCAAGAGAGCCCCCGTGCCTGAGAGCGCCCCAGAGAGCCGTGCCGGGGATGAGCCGCCACCGGAGAAGAGCATCACGGCCACCATCGACGACGTGCTCTCGGCCCGGCCCGGCTCCATGACGGAGGAGGTGGTGAGGGGCGCGCCCGAGAGCCATAAGGAGAACGGCAAGTTCCTGTTCAGCATCAACCCGGCGCAGAGCCACCGCAACATCAAGATCCTGGAGGATGAGCCGCGCAGCAAGGACGAGACCCCGCTCAGCACCCTGGCCGACTGGCAGGACTCACTGGCCAAGCGCTGCGTCTGCGTGTCCAACATCGTGCGCAGCCTGTCCTTCGTGCCGGGCAACGACCTGGAGATGTCCAAGCACCCgggcctgctgctgctgctgggccgGCTCATCCTGCTGCACCACGAGCACCCGGAGCGCAAGCAGGCGCCGCTGACCTacgagaaggaggaggaggaggacgagggaGTGAGCTGCGAGAAGGACGAGTGGTGGTGGGACTGCCTGGAGATGCTGCGCGAGAACACCCTGGTCACCTTGGCCAACATCTCGGGCCAGCTGGACCTCTCAGTCTACCCTGAGAGCATCTGCCTGCCCCTGCTGGACGGCCTGCTCCACTGGGCGGTCTGCCCCTCGGCCGAAGCCCAGGACCCCTTCCCCACGCTGGGGGTCAATGGGGTGCTGTCCCCCCAGAGACTGGTCCTTGAGACCCTAAGCAAGCTCAGCATCCAGGACAACAACGTCGACCTCATTCTGGCCACGCCGCCCTTCAGCCGGCAGGAGAAGCTCTACGGCACGCTGGTGCGCCTGGTGGGCGAGAGGAAAATCCCGGTGTGTCGGGAGATGGCTGTGGTCCTCCTCGCCAACCTGGCCCAGGGCGACAGCCTGGCCGCCCGGGCGATCGCAGTGCAGAAGGGCAGCATCGGCAACCTGCTGGGCTTCCTGGAGGACAGCCTGGCGGCCACCCAGTACCATCAGAGCCAGCCCTCGGTCCTGCACATGCAGAACGCGCCCTTCGAGCCCACCAGCGTGGACATGATGCGCCGGGCGGCCCGCGCGCTCCACGCCATGGCCAAGGTGGAGGAGAACCACTCGGAATTCACGCTGTATGAGTCGCGGCTACTGGACATCTCGGTGTCCCCCCTCATGAACTCGCTGGTGTCCCACGTGATCTGTGACGTACTGTTTCTGATCGGCCAGTCATGA

Function

symbol description
arid1a Enables DNA binding activity and nuclear receptor binding activity. Involved in chromatin organization; intracellular steroid hormone receptor signaling pathway; and positive regulation of transcription, DNA-templated. Located in chromatin and nucleoplasm. Part of SWI/SNF complex. Implicated in Coffin-Siris syndrome 2; breast cancer; carcinoma (multiple); gastrointestinal system cancer (multiple); and neuroblastoma. Biomarker of gastrointestinal system cancer (multiple) and lung non-small cell carcinoma.

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 1A isoform X1

GO: NA

KEGG:

id description
K11653 ARID1; AT-rich interactive domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010844 True 5109 mRNA 0.65 16 2506720 2519791

Neighbor

gene id symbol gene type direction distance location
AMCG00010842 NA coding downstream 4220 2499805 ~ 2502500 (-)
AMCG00010841 fam46ba,LOC107597110,LOC108443429,LOC107587747,LOC107734389,LOC107704962,LOC107700733 coding downstream 57166 2442227 ~ 2449554 (-)
AMCG00010839 NA coding downstream 124475 2365473 ~ 2382245 (-)
AMCG00010840 NA coding downstream 169977 2332216 ~ 2336743 (-)
AMCG00010835 oprd1a,LOC108411271,LOC107595906,LOC107732912 coding downstream 324248 2180504 ~ 2182472 (-)
AMCG00010845 NA coding upstream 17407 2537198 ~ 2539438 (-)
AMCG00010852 gpn2 coding upstream 100170 2619961 ~ 2623328 (-)
AMCG00010850 NA coding upstream 105212 2625003 ~ 2628517 (-)
AMCG00010849 nudc,LOC107737783,LOC107580217,LOC104951062 coding upstream 110683 2630474 ~ 2638055 (-)
AMCG00010848 NA coding upstream 129470 2649261 ~ 2661858 (-)
G102651 NA non-coding downstream 69022 2386723 ~ 2437698 (-)
G102639 NA non-coding downstream 143610 2362880 ~ 2363110 (-)
G102629 NA non-coding downstream 189456 2316765 ~ 2317264 (-)
G102623 NA non-coding downstream 254253 2252119 ~ 2252467 (-)
G102615 NA non-coding downstream 329204 2177276 ~ 2177516 (-)
G102725 NA non-coding upstream 154772 2674563 ~ 2675136 (-)
G102785 NA non-coding upstream 269679 2789470 ~ 2833183 (-)
G102816 NA non-coding upstream 434969 2954760 ~ 2954975 (-)
G102834 NA non-coding upstream 470856 2990647 ~ 2991248 (-)
G102887 NA non-coding upstream 625473 3145264 ~ 3145687 (-)
AMCG00010843 NA other downstream 10274 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 1471846 1033830 ~ 1034874 (-)
G102434 NA other downstream 1528593 975553 ~ 978127 (-)
AMCG00010794 NA other downstream 2356891 136369 ~ 149829 (-)
G102762 NA other upstream 220025 2739816 ~ 2778023 (-)
G102774 NA other upstream 238687 2758478 ~ 2761264 (-)
G102902 LOC104921322 other upstream 660179 3179970 ~ 3182619 (-)
G102990 NA other upstream 801022 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 801585 3321376 ~ 3327559 (-)

Expression


Co-expression Network