RNA id: AMCG00010849


Basic Information

Item Value
RNA id AMCG00010849
length 1549
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00010849
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 2630474 ~ 2638055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGCGGCAGGTAACGGGAGGCGGTGCTTGTTTCCAGGAAGCGCGGCGGTGCGGGAGGCAGCGTGACTCCACATTTACTGCACTTCGCGCTTCGGTTCTCGGGCGGTTTTTCACTCACCATGGCCGAGGAAGAGGAGAAGTATGACGGCATGCTGCTGGTTATGGCACAACAGCACGAAGGCGGCGTGCAGGAGctgGTGAACACCTTCTTCAGTTTCTTGAGACGCAAAACAGATTTCTTCACCGGAGGAGAGCAGGGGGCACCGGAGAAGcTGGTGAAGGAGTCGTTCGCGCACCACAATCAGCTGGCTCTGAAGGCCCAGCGAGAGAAGCTGGCCAAGCGGGAGAAGGAGCAGCGGGCAGCCAAGCTGgccgaggaggaggagcaggagaagaaGAAGGCCAAAAAGAGCGCGGAGGAGAGCGAGCCCAAAATCAAGGAGCTGACGGACGAGGAGGCGGAGCTTCTGCAGTCGGAGATCAACCAGAAGAAAGAAGACGCAAAGAAAGAGGAGATTGCCGTCCAGCCCAACACAGAGATGTCCTCTGAGAAGACGCAGGACAAGGGTTCCGAGTCGGAAGGGGAGGAGGACGAGAAGGACAAAGGCAAGCTGAAGCCCAACGGGGGCAACGGAGCCGACCTTCCGAACTACAGGTGGACGCAGTCTCTGTCCGAAGTGGATCTGCTGGTGCCCTTCGATGTGCAGTTCCGCATGAAAGGCAAGGACGTGGTGGTGGACGTGCAGAGGCGGCACCTCAAGGTGGGCCTGAAGGGCCACCCGCCGGTCATCGACGCCGAACTGTACAACGAGGTGAAGGTGGAGGAGAGCTCCTGGCTCATCGAGGACGGCAAGGTGGTCACCGTCCACCTGGAGAAGATTAACAAGATGGAGTGGTGGAGCAAGATCATCACCACCGACCCGGAGCTCAACACCAAGAAGATCTGCCCCGAGAACTCCAAGCTGTCTGATTTGGACGGGGAGACGCGCAGCATGGTGGAGAAGATGATGTATGACCAGAGGCAGAAGTCCATGGGCCTGCCCACCTCCGATGAGCAGAAGAAACAAGACATTCTGAAGAAGTTTATGGCCCAGCACCCAGAGATGGATTTCTCCAAAGCCAAGTTCAGCTGAGTGCCTCTCGTCAGGAACCGCTCCTCTGTCTCGACGGTTGTGTGTCAGACCTTAGGAAAATGTTCATCAACTACCAATGCAGACTCTCTCTTCGCCTGTAGTGTGCGGTTTCTTTTGTCTGCCCATTTTGTCCCACATCCCTAggttcaactttttttttttttttttatcattcttATTTAACCGGTTCTGTTAATGTTCCCGATCTGACGTTACCAATGcaaaggtttgtgtgtgtgtttgttttttaaataaagccgTTTTCAAACCTCACTGACGTCGCCTCGTTGTGTGGCGGTCTCTTGCTGTGCTGTGGTCTGGTGGGTCTGGATGACGGATTATATCACCGCCGCCtcgtgtgtgagagtgtgagtgcgtCTCTCTTCTGTCTGTTCCATCATAAAGCTGGGGTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128213 lncRNA downstream 142057 2481897 ~ 2488417 (-) True AMCG00010843
TU128189 lncRNA downstream 192776 2386723 ~ 2437698 (-) True G102651
TU128166 lncRNA downstream 267364 2362880 ~ 2363110 (-) True G102639
TU128152 lncRNA downstream 313210 2316765 ~ 2317264 (-) True G102629
TU128146 lncRNA downstream 378007 2252119 ~ 2252467 (-) True G102623
TU128289 lncRNA upstream 36508 2674563 ~ 2675136 (-) True G102725
TU128365 lncRNA upstream 151415 2789470 ~ 2833183 (-) True G102785
TU128418 lncRNA upstream 316705 2954760 ~ 2954975 (-) True G102816
TU128445 lncRNA upstream 352592 2990647 ~ 2991248 (-) True G102834
TU128510 lncRNA upstream 507209 3145264 ~ 3145687 (-) True G102887
AMCG00010850 mRNA downstream 1957 2625003 ~ 2628517 (-) True AMCG00010850
AMCG00010852 mRNA downstream 7146 2619961 ~ 2623328 (-) True AMCG00010852
AMCG00010845 mRNA downstream 91036 2537198 ~ 2539438 (-) True AMCG00010845
AMCG00010844 mRNA downstream 110683 2506720 ~ 2519791 (-) True AMCG00010844
AMCG00010842 mRNA downstream 127974 2499805 ~ 2502500 (-) True AMCG00010842
AMCG00010848 mRNA upstream 11206 2649261 ~ 2661858 (-) True AMCG00010848
AMCG00010851 mRNA upstream 49011 2687066 ~ 2689410 (-) True AMCG00010851
AMCG00010857 mRNA upstream 56350 2694405 ~ 2706621 (-) True AMCG00010857
AMCG00010858 mRNA upstream 74472 2712527 ~ 2723800 (-) True AMCG00010858
AMCG00010859 mRNA upstream 124471 2762526 ~ 2767269 (-) True AMCG00010859
TU127939 other downstream 1595600 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 1652347 975553 ~ 978127 (-) True G102434
TU127810 other downstream 2480645 145945 ~ 149829 (-) False AMCG00010794
TU128333 other upstream 101761 2739816 ~ 2778023 (-) True G102762
TU128350 other upstream 120423 2758478 ~ 2761264 (-) True G102774
TU128533 other upstream 541915 3179970 ~ 3182619 (-) True G102902
TU128662 other upstream 682758 3320813 ~ 3419176 (-) False G102990
TU128675 other upstream 687803 3325858 ~ 3327559 (-) False AMCG00010895

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027855 False 1320 mRNA 0.46 9 NC_007130.7 14158075 ~ 14169457 (+)
mexican tetra (Astyanax mexicanus) TU265338 True 1382 lncRNA 0.46 9 NC_035919.1 6419851 ~ 6430564 (+)