RNA id: TU128662


Basic Information

Item Value
RNA id TU128662
length 645
RNA type TUCP
GC content 0.49
exon number 5
gene id G102990
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3320813 ~ 3419176 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGGATGTCTTTGAGTCCCATAAAGGTGACCCGTTTGACCCCACCACCAACATCAACTCAGCGGTGTCTAATGTGATCTGCAGCATTGTGTTTGGAGACCGGTTTGACTACAGCGACCCCCAGTTCCTACGACTCCAGCAACTTGTCAGCCAGAATGTTAAGCTCGCCACCTCCCCTGCGATGCGGCTGTACGACATCTCCCCTTTCCTGGGGTCCTTTCTTGCCAATTTcaagaaaatgtacagtaatacTTTAGAGAATCGGACGTTCTTCTCCAACTACTACCATAAGCACAAGGACATTGTGGATAGAAATGACCTGAGGAGCTTCATTGATGCTTTCATTGCCAAACAGCAGGACGAGaatGCTAAAAAcccaaatacttatttccatgAGATGAACATGGTGACCACTGCAGGGAACCTCTTTGCTGCAGGAACAGAAACTACATCAACCACTCTGCGCTGGGGGcttctgatgatgatgaaatacCCTCTCATACAGGAGAAGGTGCATGCTGAGATCCAAGCAGTGATTGGGAAAGAGCGCCCCCCAAGGGTGGAGGACCGAAAGGACATGCCTTACACTGACGCGGTGCTGCACGAGATCCAGAGGTTTGCTAATGTGGTCCCCATGAATCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128569 lncRNA downstream 51044 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 159301 3161097 ~ 3161512 (-) True G102890
TU128512 lncRNA downstream 159916 3160583 ~ 3160897 (-) True G102889
TU128511 lncRNA downstream 160777 3159837 ~ 3160036 (-) True G102888
TU128510 lncRNA downstream 175126 3145264 ~ 3145687 (-) True G102887
TU128685 lncRNA upstream 1712 3420888 ~ 3424769 (-) True G103006
TU128714 lncRNA upstream 135007 3554183 ~ 3559393 (-) False AMCG00010901
TU128741 lncRNA upstream 365081 3784257 ~ 3784631 (-) True G103050
TU128784 lncRNA upstream 719444 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 731323 4150499 ~ 4150917 (-) True G103094
AMCG00010891 mRNA downstream 57349 3258943 ~ 3263464 (-) True AMCG00010891
AMCG00010883 mRNA downstream 111249 3190821 ~ 3209564 (-) True AMCG00010883
AMCG00010879 mRNA downstream 148824 3168425 ~ 3171989 (-) True AMCG00010879
AMCG00010880 mRNA downstream 177054 3141407 ~ 3143759 (-) True AMCG00010880
AMCG00010878 mRNA downstream 179604 3128252 ~ 3141209 (-) True AMCG00010878
AMCG00010893 mRNA upstream 23265 3442441 ~ 3450634 (-) True AMCG00010893
AMCG00010894 mRNA upstream 34747 3453923 ~ 3463743 (-) True AMCG00010894
AMCG00010892 mRNA upstream 55456 3474632 ~ 3483623 (-) True AMCG00010892
AMCG00010900 mRNA upstream 66365 3485541 ~ 3495838 (-) True AMCG00010900
AMCG00010898 mRNA upstream 79826 3499002 ~ 3507995 (-) True AMCG00010898
TU128533 other downstream 138194 3179970 ~ 3182619 (-) True G102902
TU128333 other downstream 542790 2739816 ~ 2778023 (-) True G102762
TU128350 other downstream 559549 2758478 ~ 2761264 (-) True G102774
TU127939 other downstream 2285939 1033921 ~ 1034874 (-) True AMCG00010806
TU127921 other downstream 2342686 975553 ~ 978127 (-) True G102434
TU128814 other upstream 750617 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 1223476 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1715034 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 2285594 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 4552448 7971624 ~ 8019522 (-) False G103832

Expression Profile