RNA id: TU128814


Basic Information

Item Value
RNA id TU128814
length 691
RNA type TUCP
GC content 0.48
exon number 2
gene id G103112
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4169793 ~ 4185974 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acatacatatacatacacacacacctcgacaaacaaaatcatttttttccaatatcgttttttctttcaaaataatgagatcttatgcttttattttgaacaaTTCTCAAGCTTTAGTATGTGTAAAGGTCCACGGCACACATTCAATATCCCCAGCGTCACTTTAGAATAGTTTCAAGTGTtgtctgcaaaaataaaatatatttatttaccatgaTTCTGTGTGGATAATTGGCATTATGCTCTTTCAAGTTTACTGGATGGGAGGGCTTTCTTGTCGTTTCGTTTTAATGGACACCGATCAAGAGCAACATACTAAAGCACTATTACAAATGACCTGAGACTAGATATCCGTCCTCCGGGGGGGAGGGACGGAGTACAAAAGATGTATTTCGGTTTTATTTCCCGACGACACACAAAACACCCCGCAGAGCGCTCACTCGTCGAGCCCCTCGTCGTCCTCGTCCTCCGGTCTCTCGTCCACCTCGGTCGTGTCGGAGGACTCGTGCAGCAGGACGTACTCCCGGCTGCTGAAGCCGAACTTCAGCACGTCCTTCTCTTTCAGTTCGTAGTATCGCTGCGGGTCGATGCGCTGGTTGTTCAGGTAGGTGCCGTTCCCGGAGCCCAGGTCGATGATGTAGGGCCGCACCCTCCTGCCGCTCGTGCCATCGGCCCGGGTGAACGCCACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128794 lncRNA downstream 17045 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 18876 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 30156 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 385162 3784257 ~ 3784631 (-) True G103050
TU128714 lncRNA downstream 610400 3554183 ~ 3559393 (-) False AMCG00010901
TU128853 lncRNA upstream 239380 4425354 ~ 4425572 (-) True G103149
TU128989 lncRNA upstream 929741 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 929741 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 1098356 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 1145758 5331732 ~ 5334257 (-) True G103309
AMCG00010914 mRNA downstream 2756 4155031 ~ 4167037 (-) True AMCG00010914
AMCG00010910 mRNA downstream 111064 4028802 ~ 4058729 (-) True AMCG00010910
AMCG00010909 mRNA downstream 148872 4015598 ~ 4020921 (-) True AMCG00010909
AMCG00010904 mRNA downstream 558248 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010902 mRNA downstream 581698 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010917 mRNA upstream 104082 4290056 ~ 4291183 (-) True AMCG00010917
AMCG00010919 mRNA upstream 371579 4557553 ~ 4569654 (-) True AMCG00010919
AMCG00010921 mRNA upstream 388342 4574316 ~ 4575551 (-) True AMCG00010921
AMCG00010920 mRNA upstream 394877 4580851 ~ 4589405 (-) True AMCG00010920
AMCG00010924 mRNA upstream 406928 4592902 ~ 4604694 (-) True AMCG00010924
TU128662 other downstream 750617 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 750617 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 842234 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 987174 3179970 ~ 3182619 (-) True G102902
TU128333 other downstream 1391770 2739816 ~ 2778023 (-) True G102762
TU128916 other upstream 456678 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 948236 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1518796 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3785650 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 4633577 8819551 ~ 8863666 (-) False AMCG00011051

Expression Profile