G104883


Basic Information

Item Value
gene id G104883
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13186948 ~ 13229416 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131175
TACATTAAATGcactttttattctttaaacacaaatgtcaggtcacatttgcatttgataAATATACTCTACAATTGAactttatacatattttttcatgtttattttaaacaaaaacacagtaacaAGTACGCCACTCCTTTGTGCAACAGTAGcttaataattacagtaaacatTCAACTTGGGTGACATTAAAGCTGTGCCTCACCCTATTTAAGCAATTACAGACAATTAAGGTGTGCAATGAGCAAGCCAGGTCAGTATCCCTTAGACCAGTGGTGTCCCATTAAGATTAGGATGGCAGAAGAGAGCATGAAGTAAGTGCAGTGGTAGTTTTAGggttatatataataatgtgataacatttaaatgtctccCCTAAAGAAACATATCTCTCtgggtgtctctgtgtgtgtgtgttttcttaaaGTCTTCATGTTCTGGTACtatgaataattttgtattactataaGTCAATATACTTTGTCATCAGAAGTGGCGGGCTGAGTGGTCCGTGGACCCAAAAAGTTTGAGAAATCCTGCCTAGACCATTGGCCTCTCCCCTCTGTGGCCCCGACACCCTGACTCACTCGCACTCACTCGGTGTTATGTAATGCAATGGGTCTCAGCGTCAGTAAGGAATGCAGACTCAGCTTGTTCATCACAGGGTTATTGCACACAGTGGCACTATCTCTTGAAGTGTGCACAGGAAACACATTGGATTCCCCCACATAGGACCACAAGCAGACCGGgaacatgaaagaaaagcacaagcAAACACCACACTGCTGAGTTAGCGCTGTACTGAGACTGCGAGGCTCTGAAGAAACAGGTGCAGTTTGTAAAAGCAGCCAGCGGAAGGCAGTGTGTACAAATGCTTCACAAGGAGGGGAAAGTGCATTGAAGGCAATCGTTGTACATAGAAACCAATTCAACATAGATCATTAGACACGTTGTACATGTTCTGACTGGTACATACACAAACATCAATAGGCGGTGAATACATTGTCctagtgtgtatttatttatattgtatgtatttatatttaaatgaagaaatcCTGCAGTAGAGAAAGGTATGATGCTTcctgtgtttaaaatatgtgtctGCATGGAAACATTGTAGCACTGGTTGCATTGTTGTACCAGTGAGAAGCAGAAAATTAAATCTTCgtgaatcatatatatatatagctttgaaaaaaattaagagaccactccaagttcagaaatcaatgttaagtggtctctgaattttttccagtgctgtatatatatatatatatataaagtgccatatatatacagtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131175 True 1320 lncRNA 0.39 2 13186948 13229416

Neighbor

gene id symbol gene type direction distance location
AMCG00011181 NA coding upstream 17799 13156251 ~ 13169149 (+)
AMCG00011177 NA coding upstream 182521 12999534 ~ 13004427 (+)
AMCG00011172 NA coding upstream 225163 12960213 ~ 12961785 (+)
AMCG00011171 NA coding upstream 258986 12918054 ~ 12927962 (+)
AMCG00011176 NA coding upstream 271877 12901039 ~ 12915071 (+)
AMCG00011187 ubtd2,LOC107672801,LOC107718046,LOC108279301 coding downstream 55881 13285297 ~ 13314709 (+)
AMCG00011186 NA coding downstream 98966 13328382 ~ 13330598 (+)
AMCG00011185 LOC107723822,LOC107664350 coding downstream 119148 13348564 ~ 13367027 (+)
AMCG00011189 ebf1 coding downstream 147175 13376591 ~ 13379795 (+)
AMCG00011192 NA coding downstream 258530 13487946 ~ 13492456 (+)
G104835 NA non-coding upstream 167884 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 246778 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 355668 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 635084 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 752392 12429496 ~ 12434556 (+)
G104910 NA non-coding downstream 323985 13553401 ~ 13555056 (+)
G104923 NA non-coding downstream 436531 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 628415 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 629235 13858651 ~ 13858982 (+)
G105046 NA non-coding downstream 833284 14062700 ~ 14063157 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 243866 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 507519 12670376 ~ 12679429 (+)
G104719 NA other upstream 567893 12610129 ~ 12619055 (+)
G104694 NA other upstream 659917 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1046483 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 638921 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 756249 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 783705 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1390274 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 2091364 15320780 ~ 15322658 (+)

Expression


Co-expression Network