G104910


Basic Information

Item Value
gene id G104910
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13553401 ~ 13555056 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131203
ctttttgttttgcttttcaggCTTACAGAAAACGGATACTGTTTTAAACTAATAGTATGCATGGGATCTCTTCCTGTGGGAGTGATGGTTGCATTTTGTGCATTGAAAATAGGAAGAccattttggggggaaaaatatgaaaatactttctttgtttctttctttggtctttgtttctttctttatgcCTGCTGTATCtctcttctgtttgtttcttattttctctttcactgaCATTTGAACCAGCAGATTGGATGCCTTAATAATGCAAAATCATACCCATTCTTTCACATGTATGTTGTAATCTTCACCAGGGTTGTCTGTCATCACagagtatttaaaacaaaaccagaaaccGTTAggagtttttttatatttaaaaaaaaagcacaaaatgaaCTTTTTTTGTTACCTTGATGTGAATCTGTTTTCTGAGTCTTCATACTTGGAACTCAGCATTTTTACGATCTTGTCGAAGCGCTGGCATTTTTTTCATTGGGGGTTGTGGGGGAGTAAGTGGAAAGGCCGACTTTTGAGgtgattaatatttaatgtgtgttgCGAGTGGgtaggtgggggggggagggtgcGCTGTATTTTTAAGTTAAAGTGAAACCTGTTATttcatctgtttttctgttcccTTTTTTTCTGTTAGTGGCGGtttaagaaagagagaaaaataaaagccatgtcttttttttttgttgctttgtttttgttaggagtCTGTGTTCCGCCACATGGTCACTCGCAGAATATGAACAGTCCCTTAAAGCAAGCGAAGGATTTACACACCTCTTAATACTAACTTGTGTAGTTACTGCATGTCAACACTGCAGTAATGCCCAGACTGTAGCCATGCTTATGACTACAgagtaattacacatttataactGTCTGCAAATTCCTAACATCGCTACAACTGATAACACTATAGTATAATTACATACATCTGTGTGAaatgccccctctctctctctctctctctctgtctctctctctgtctctctctctctcttcccacaATCCCCTGCATTGAGAGCCCTTTCATTGTATCACAGAAAATCGCAGTTGCGTCCCTCTCTGTTTGAGGGAGAGTAACTGTATGTCCCTCACCTGAGTCCACCTGCACCCTGTCATTTTGGTGAACACATGCACTGTATTTTAGATAGAGATTCTGTATTCTGAGGAGAATATggcttttcagtttttctcgtgtaggattatttttttaagaacatcAGTTATCATCTAAGGGACTTTTACTAAGGGGAGGGTTTTTGAGCTCCTCTGTTGTAGGCACTTGtttaacaatattaatgtttctggggtttgattttgtttctgttttgtttttaccaataataattttaaaaagattcaGGTTACCTTGTAATGACTTAATTGTAAGCGAGATATAATTTTGTCATGCAGATTTGCAGACAATAAAGtctgagagaaaaacaaactgacaaacaaaCGACAAAGCTGGTTTTCCCTTCCTTCTTTTTTCAGAATCCTTCTTTGACTAGACACACACTGAACAGTTGTATTaatagggaaaagaaaaaaaactactgtaTAGATTGTTATCATTTTTGATGAACTTTGAGCTGTATAATAACTTTTCAACtttcacaatatttaattaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131203 True 1656 lncRNA 0.37 1 13553401 13555056

Neighbor

gene id symbol gene type direction distance location
AMCG00011190 ebf1,LOC107669108,LOC107723797 coding upstream 9118 13538248 ~ 13544283 (+)
AMCG00011191 LOC107595778,LOC103481132,LOC106906007,LOC107749771,LOC106521921,LOC100695038,LOC106611650,LOC105028844 coding upstream 47881 13502635 ~ 13505520 (+)
AMCG00011192 NA coding upstream 60945 13487946 ~ 13492456 (+)
AMCG00011189 ebf1 coding upstream 173606 13376591 ~ 13379795 (+)
AMCG00011185 LOC107723822,LOC107664350 coding upstream 186374 13348564 ~ 13367027 (+)
AMCG00011193 NA coding downstream 105868 13660924 ~ 13677591 (+)
AMCG00011195 thg1l coding downstream 132200 13687256 ~ 13691363 (+)
AMCG00011199 NA coding downstream 136780 13691836 ~ 13696708 (+)
AMCG00011196 NA coding downstream 152468 13707524 ~ 13721661 (+)
AMCG00011197 tcerg1,LOC102783943 coding downstream 167483 13722539 ~ 13742007 (+)
G104883 NA non-coding upstream 323985 13186948 ~ 13229416 (+)
G104835 NA non-coding upstream 534337 13018792 ~ 13019064 (+)
G104814 NA non-coding upstream 613231 12935436 ~ 12940170 (+)
G104800 NA non-coding upstream 722121 12830849 ~ 12831280 (+)
G104709 NA non-coding upstream 1001537 12551040 ~ 12551864 (+)
G104923 NA non-coding downstream 110891 13665947 ~ 13679380 (+)
G104979 NA non-coding downstream 302775 13857831 ~ 13858192 (+)
G104980 NA non-coding downstream 303595 13858651 ~ 13858982 (+)
G105046 NA non-coding downstream 507644 14062700 ~ 14063157 (+)
G105051 NA non-coding downstream 515344 14070400 ~ 14070969 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 610319 12942380 ~ 12943082 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other upstream 873972 12670376 ~ 12679429 (+)
G104719 NA other upstream 934346 12610129 ~ 12619055 (+)
G104694 NA other upstream 1026370 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 1412936 12067451 ~ 12140465 (+)
AMCG00011204 NA other downstream 313281 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 430609 13985665 ~ 13992845 (+)
AMCG00011209 cpeb4,LOC106603870 other downstream 458065 14013121 ~ 14061027 (+)
G105139 LOC100846954 other downstream 1064634 14619690 ~ 14620534 (+)
AMCG00011241 LOC102221627,LOC107740141,LOC107680337,LOC107593202 other downstream 1765724 15320780 ~ 15322658 (+)

Expression


Co-expression Network