AMCG00012060 (ndufs2,LOC102781006)


Basic Information

Item Value
gene id AMCG00012060
gene name ndufs2,LOC102781006
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9627154 ~ 9634149 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012060
GGCGGCCATTTGGCACTCCGATTCTGACCCGATTTGTCTTGACTGTGCCATAATAGAGCGAGGACCCGGAAGCGTTTAGTGGCTTTCAAGATGGCGGCGGCTATCCTGAGGTCGCTTGCTAAACTGAAATGTCCTTCAAGCGTGATATTAAACAAGAGTTTAATGTGCCCGACGAGCACAGTGCTGCAGAATAGacaCAAGCAATGGCAGCCGGATGTCGAGTGGACAGAGCAGTATGCTGGAGCAGTTATGTACCCCAGCGCCATCACTGACAAATGGGTCCCCCCTCCATGGAACGACAAGGACCCCCCGGCGGAGAAGGAGGTGTCCAACCTCACCATAAACTTTGGGCCCCAGCACCCGGCCGCCCATGGCGTACTGCGCTTGGTCCTGGAGCTCAGTGGCGAGTCGGTGAAGAAGTGCGACCCCCACATCGGCCTCCTTCACCGCGGCACTGAGAAGCTCATCGAGTACAAGACATACCTGCAGGCTCTGCCCTATTTCGACCGTCTGGACTACGTGTCCATGATGTGTAATGAACAGGCCTATTCTCTGGCTGTGGAGAAGCTGCTCAACATCCAACCTCCTCCTCGCGCTCAGTGCATCAGAGTGCTGTTCGGGGAGCTCACTCGCATCCTCAATCACATCATGGCCATCACCACCCACGCGCTGGACATTGGAGCCATGACCCCCTTCTTCTGGATGTtcgaggagagagagaagATGTTTGAATTCTACGAGCGTGTTTCAGGGGCTCGGATGCACGCGGCGTATGTCCGACCTGGGGGAGTTCACCAGGATATGCCACTTGGCCTGATGGATGACATTTACGAATTCTGCAAGAACTTCTCCCTCCGCATTGATGAGGTGGAAGAGATGTTGACCAACAACCGGATTTGGAAGAACCGCACTGTTGACATCGGTGTTGTCACTGCAGAAGAAGCACTGAACTATGGCTTCAGTGGCGTGATGCTCCGCGGGTCTGGAATCAAGTGGGATCTGCGGAAATCCCAGCCCTACGACGGTTACGAACATATGGAGTACCTGTGCCGGGTGGAGGAGATGAGGCAGTCCCTCCGCATCATGCTGCAGTGTATGAACAAGATGCCCGAGGGAGAGATCAAAGTAGATGACGCCAAGGTGGCTCCGCCCAAGAGGTCAGAGATGAAGACCTCAATGGAGGCTTTGATTCACCACTTCAAGCTGTACACCGAGGGCTACCAGGTGCCTCCCGGGGCCACCTACACTGCCGTGGAAGCTCCCAAGGGGGAGTTTGGCGTGTACCTGGTGTCTGATGGCTCCAGCCGACCGTACCGCTGTAAGATCAAAGCTCCCGGATTCGCCCATCTGGCTGGGCTGGACAAAATGGCGAAAGGCCACATGCTTGCCGATGTTGTAGCCATTATCGGAACCCAAGATATTGTATTCGGGGAGGTTGACCGTTAGTGGAAGCCAGTCTTCACTCACAGCTGTTCAGCTCACATGAGAGTGAccagtaatttttttttctttttttttttcttgcctggtctcttccctcccccccacctcaaCCTACACTCAAATAGAATCTGAATATGTATTGAAGAAAcctaataaatattttcaattcaagaagtgatttttgattttcttttctcaagTCTTTTCTTTCTGGGTTGACGCCTGACCCGTTCATCCTGGCATTTCACCACATAGAGTGGTTACATATCTTAAATGAGGTCACTTGTTTTGTGTTCACAATAAGCACTAGTGGG

Function

symbol description
ndufs2 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in Leigh disease; hypertrophic cardiomyopathy; inherited metabolic disorder; multiple sclerosis; and nuclear type mitochondrial complex I deficiency 6. Orthologous to human NDUFS2 (NADH:ubiquinone oxidoreductase core subunit S2).

NR:

description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0048038 quinone binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03935 NDUFS2; NADH dehydrogenase (ubiquinone) Fe-S protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012060 True 1757 mRNA 0.52 14 9627154 9634149

Neighbor

gene id symbol gene type direction distance location
AMCG00012065 NA coding downstream 30662 9579556 ~ 9596492 (-)
AMCG00012062 NA coding downstream 49097 9569628 ~ 9578057 (-)
AMCG00012064 NA coding downstream 66527 9557497 ~ 9560627 (-)
AMCG00012066 NA coding downstream 70200 9555193 ~ 9556954 (-)
AMCG00012068 NA coding downstream 73547 9552561 ~ 9553607 (-)
AMCG00012061 zgc:77880,LOC105904859,LOC107723165,LOC108439367,LOC107692630,LOC108258288,LOC103363053 coding upstream 11445 9645594 ~ 9650019 (-)
AMCG00012063 eif3f,LOC103138002 coding upstream 17108 9651257 ~ 9656027 (-)
AMCG00012059 kcnj10,LOC100694690,LOC105030129,LOC108440277 coding upstream 48524 9682673 ~ 9688681 (-)
AMCG00012071 NA coding upstream 114120 9748269 ~ 9748552 (-)
AMCG00012070 NA coding upstream 134363 9768512 ~ 9774041 (-)
G134226 NA non-coding downstream 210696 9414316 ~ 9416458 (-)
G134143 NA non-coding downstream 435862 9154436 ~ 9191292 (-)
G134069 NA non-coding downstream 824168 8802407 ~ 8802986 (-)
G133997 NA non-coding downstream 1143497 8430988 ~ 8483657 (-)
G133915 NA non-coding downstream 1438461 8188289 ~ 8188693 (-)
G134298 NA non-coding upstream 22207 9656356 ~ 9656645 (-)
G134396 NA non-coding upstream 158161 9792310 ~ 9799446 (-)
G134402 NA non-coding upstream 218752 9852901 ~ 10347725 (-)
G134405 NA non-coding upstream 301951 9936100 ~ 9946489 (-)
G134404 NA non-coding upstream 566653 10200802 ~ 10201225 (-)
AMCG00012058 NA other downstream 1028 9612479 ~ 9626126 (-)
G134244 NA other downstream 88262 9535268 ~ 9538892 (-)
G134119 NA other downstream 481859 9140824 ~ 9145295 (-)
G134036 NA other downstream 925513 8699411 ~ 8701641 (-)
G134005 NA other downstream 1061890 8489200 ~ 8565264 (-)
G134395 NA other upstream 156692 9790841 ~ 9791348 (-)
G134397 NA other upstream 175649 9809798 ~ 10244924 (-)
G134400 NA other upstream 213392 9847541 ~ 9848106 (-)
G134411 NA other upstream 321702 9955851 ~ 9956360 (-)
G134403 NA other upstream 324096 9958245 ~ 9958873 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_00960146_00977733 NDUFS2, NDUFS2.L coding CI01000344 null 960027 ~ 979452 (-)