AMCG00012134


Basic Information

Item Value
gene id AMCG00012134
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11409444 ~ 11418782 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012134
aaaataaaaataaaaaatgtaacagaatATACTGTGTagatatgaacaaaataatacagttgcTCTTGATATGTGTGGTCCCAGAGAAGGACCTATGAttagtgcaaaacaaaaacaaatacataaacaaacattgcagagaaaacttgggaacattattaaaaataccaGAGATGTGTTTGCATACTTTTGGTGGGAATAATAACTTAGACTAcatggacatttaaaaaaatgtattacctgAGAGGTGGCACACATGATTGTATCTTTAATGTGAAAGGTAATGTTAATGTGATCTGTAAGACAGATACTGATCATATAACGTTTCGCTGAGACCCCACTAGGCACCTTCATATCCACCTCTGATGACAGAGACAACAGGAAACCCTGGTATCTGTATAAAAAGCCTCTGATCGTACATTATCTTCAGATACACATTGCGACAGACATCTGTACAAAGACGCACCACTTTCTGCAGATCCACCGATTCCCCAGCCCAGAGAGCTGTACAGCCAGACccacagacagactcacagacCTGTTGGGTTAAGATGctcctcctgcagctgctgtgttGCCTGCTGACACTGAACACCCTGGAAGtGTCCAGCAGTCCTCTGTCCAGGAGCTTTATAGTGGGGGGTCAGGATGCAGAAGAGGGACGGTGGCCCTGGCAGGCCTATCTCCAGATCAGTCTGAAGTATAAGCCTGGATATTCTACCATCTGTGGCGGCTCCCTGGTCAGTGAGCGCTGGGTTCTCACTGCAGCGGCCTGCTTTGATGACCCTTATGTCTTGAAGACATCTAGTGTGCGCCTGGGAGCGTACAAGCTAAAAATTCACAATTCACATGAAATAGAAATTCCCATAAAGGGGAATCCCATCATACACGAGAAGTACTTGGTTAATAAATCCCGCAATGGCTATGACATCGCCCTGGTGGAGCTCATCCCACCAGTGTCCTACACCCGGTACATCAGCCCTGTCACTCTGGCTGAGGATGACGGTGACGACTTCAGCAGGGGTTGGGAGTGCTGGTCTACAGGCTGGGGGAGAAACGGAGAGAATGACTCTCTACCATCACCTAATACCCTACAGGAAGTCCAGACCCCTGTCATTACAAACATCAGATGTAAGCATTTGCGTAGATCTAATATCAGAGACGACATGCTCTGTGCTGGGGGTGAAGGAAAGGGTACCTGCAAGggTGACTCTGGGGGGCCTCTGGTGTGTAGGGAGGGCAAAGGAGACAAATGGATCCAGGCTGGGATCACCAGCTGGGGTCATCACTGTGCAACTGAGAAACCTGGCATCAAGACCCGGGTCTCCAGCTTCCGCAGCTGGATAAAGAAGCGCAGTGGTGTCTGAGATTCTTACTGAGGACAGTCTacctggctggctggctcactgcTCGCTCTTCTGCACCCAGATCTTATGTGTTTAGACCGGCAGATAATATATCACCTACACTGTTCCCCCTGTCccctctgtccctgtgtctccctgtcctgttgtgtgtgtttttctgaggGACTCTCTGTCATCTCTTCACCTCCCCAGTCCTAGTGTGTTTATTACTGAGGGACGCTtcattatatgcattatattgctattatattcaaaattaaagttGCACAGTACattcaataacaaacaataacaaagatataattaaaatacctgTTCCATATATAGCAATTAGTAaagtatgtttaaatacatacattgaaaatatgGTTATACACAATTTTAACACTTGACATAAAGTATTCTAAATGAAACTGATAATAATAGATGATTATAAACTTCTGGGAAAAGAGTGTATTTCTGTGTCTCCAGATCCAACTCTGTGTTCATTCCTGAGGGctgccctgctctctcctctcccactgTGATATCAGCTGCTGCTCTTGGCTCTGCTCTGGGctgccctgctctctcctctcccactgTGATATCAGC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012134 True 1961 mRNA 0.45 6 11409444 11418782

Neighbor

gene id symbol gene type direction distance location
AMCG00012138 NA coding upstream 4428 11403660 ~ 11405016 (+)
AMCG00012136 NA coding upstream 20682 11386573 ~ 11388762 (+)
AMCG00012128 NA coding upstream 26856 11360239 ~ 11382588 (+)
AMCG00012140 NA coding upstream 28672 11380073 ~ 11380772 (+)
AMCG00012127 mapk7 coding upstream 97400 11302454 ~ 11312044 (+)
AMCG00012137 NA coding downstream 17735 11436517 ~ 11440510 (+)
AMCG00012135 NA coding downstream 21730 11440512 ~ 11445488 (+)
AMCG00012142 NA coding downstream 47026 11465808 ~ 11469405 (+)
AMCG00012147 NA coding downstream 59110 11477892 ~ 11478122 (+)
AMCG00012146 NA coding downstream 74935 11493717 ~ 11509522 (+)
G134698 NA non-coding upstream 107379 11300334 ~ 11302065 (+)
G134692 NA non-coding upstream 175561 11233681 ~ 11233883 (+)
G134615 NA non-coding upstream 426650 10967276 ~ 10982794 (+)
G134556 NA non-coding upstream 556153 10849858 ~ 10853291 (+)
G134498 NA non-coding upstream 810603 10598539 ~ 10598841 (+)
G134749 NA non-coding downstream 85178 11503960 ~ 11504648 (+)
G134766 NA non-coding downstream 292468 11711250 ~ 11766411 (+)
G134779 NA non-coding downstream 400475 11819257 ~ 11844832 (+)
G134877 NA non-coding downstream 497562 11916344 ~ 11918265 (+)
G134879 NA non-coding downstream 505486 11924268 ~ 11926131 (+)
G134697 fus,LOC103040960,LOC107658502 other upstream 115545 11242229 ~ 11293899 (+)
AMCG00012112 NA other upstream 348414 11049065 ~ 11061030 (+)
G134613 NA other upstream 474337 10926606 ~ 10935107 (+)
AMCG00012088 NA other upstream 725347 10629684 ~ 10684097 (+)
G134343 NA other upstream 1091626 10303273 ~ 10317818 (+)
G134743 NA other downstream 17597 11436379 ~ 11446163 (+)
AMCG00012152 NA other downstream 200395 11619177 ~ 11870630 (+)
G134898 NA other downstream 612115 12030897 ~ 12031490 (+)
G134955 NA other downstream 753756 12172538 ~ 12172802 (+)
G134958 NA other downstream 762279 12181061 ~ 12181320 (+)

Expression


Co-expression Network