AMCG00012349 (LOC106588560,LOC106570198)


Basic Information

Item Value
gene id AMCG00012349
gene name LOC106588560,LOC106570198
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16674279 ~ 16706193 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012349
ATGCAGGAAAAGAGACGTGGCTCTTCCAGGGGGATGGACCGGATGAGTGAGGAGGCCCTGAGGCTGAACCTGTTGAAGAGGGGCCTGGAGCCCCCCGAGGAGCGGGACGAGGCCCTGGCCAAGAGGCTGAAGATGGAGGGCCACGAGGCCATGGAGCGCCTCAAGATGCTGGCCCTGCTCAAGCGCAAGGACCTTGCCGGCATGGAGGccggaggaggaggcggaggcggCTTGGCGGAGGGCAAGGGCGGCCCGGGTGCCGGGATGGCCCTGGGGGCCGGCGCCGGGGGGGTGTATGAGGAGAAGATGAATGGGAGTCTGCGAGGGGGCGGACACGGGGACCCCCGGGGGggaagtggaggaggaggaggaggaggaggaggaggcggcggcggcggcggcggcggcggcggtggTGGCggtggaggaggagcagcaggtGGAGGAGGCGGTGGCAAAACGGGCAAAGAGAACATGGGAGATGAGCCGGTGGACATGAGTGCCCGCAGAggcgatCCCGACCGCGAGCGCCGCACCCCCTCCCCGGACGTCATCGTGCTGTCGGACAACGAGGCGTCCAGTCCCCGCGCCTCGACCCGCATCGAGGAGCGCCTGAGGGCGGCCAACCTGGAGATGTTCAAGgggaaGAGTGGCGAGGAGCGGCAGCAGATGATCAAGGCGCTGCGGGAGGAGCTGcggctggaggaggcccggctGGTGCTGCTCAAGAAGCTCCGCCAGAGCCAGCTGCAGAAGGAGAACCTGGTACAGAAGgtGCCTGTAGTGCAGAACACCCCCTCGGCAGTGCAGCCCTCCCCTGTGCACAGCAGCCAGCAGGGCCTGAACAAGCCCCCCCCGCGGCCCGGCATGCACACCCCCGACGCCCACAACCTCAGGACGGTACAGGGTCACTCTGTGATCAGGTCGGGGGCCAACGCCTCTCTGCCCCAGATGATGATGTCCCAGCGGGTGATCGCACCTAACCCTGCCCAGCTGCAGGGCCAGCGCGGACCTCCCAAGCCTGGCATGGTGCGTTCCAGCTCTGCAGGCATCAACTCCGCCGTCAGCTACCAGCAGgCCTCCAGCCAGCAGGTGGCGGCATCCCAGCGCTCGGCCTCCTCTGCCATCTACATGAACCTGGCGCACATGCAGGCCGGCGGGGTGGGCTCAGTGGGCGGGGTGGGCGCAGTCAGCCCCTCGCCCCTGCCCAGCCCCGGCTCCACCCTCCCCGAGCCGGTCAGCAGCCAGGCGGCCGCCAAGCTGGCCCTGCGCAAGCAGCTGGAGAAGACCCTGCTGGAGATCCCGCCGCCCAAGCCCCCCGCCCCGCTGCTGCACTTCCTGCCCTCGGCCGCCAACAGCGAGTTCATCTACATGGTGGGCCTGGAGGAGGTGGTGCAGAGCGTCATCGACAGCCAGGGTAAGCTGCGGGGGCCCCTGTCCCGCATGGACCCATTCATGTGTGCCCAGTGCAAGACGGACTTCACCCCCCACTGGAAGCAGGAGAAGGGTGGGCGCATCCTGTGCGAACAGTGCATGACATCCAACCAGAAGAAGGCCCTGAAAGCGGAGCACACCAACCGGCTGAAGAACGCCTTCGTCAAGGCCCTGCAGCAGGAGCAGGAGATTGAACAGAGACTGCAGCAGCAGGCCGCGCTCTCCCCCAGCTCGGCCCCCACTGTGCCCAGCGTCAGCAAAGCCGACACTATGATCAGGCACCACGCGCTGAGACAGCGGGGCCTGTCCAGCTCGGCGAGGGGGGTGCTGTCCAACTTTGCCCAGGCCTCCCAGCTCTCGGTAGCGGGCGGCCTGCTGGGCATGGCGGGCAAGCGCAGCAGCGGGAGCAGCCGGGCGCAGCACGAGGGCCGGCGCCAGCTCTACAACATCCCAGGCGTCAACATTGCGTACCTCAGCCCTGGCGGGGTCGGAGGTCACAAGGCGTCCAGTCTGGCTGACCGGCAGCGGGAGTACTTGCTGGACATGATCCCCCCCCGCTCCATATCGCAGTCGATCACCGGCCAGAAATGA
>TU171182
GGCCGGCCACAATGTATCTGTCAGGGTGAGCCTGCGCTACATAACAGCCTCTTTAGTtcccatcatcatcatcatcatcatcagcagcagcagcagcgctgTCCCCTCCCCTCCAGACACAGACAACAACACACACCTTCAGAGGGGCGCCTCCCCGACACCGCCGCCGACCAATAACCCGGCTGTGTGCGCCGAGAGCGGGGGGACGAGCGCTCGCCGGGGCCCAATCAGCGCCTTTGTGTTGCTCGCCGGTGCCGGGGACTGGTCGGTGCTGGAGCTGCTGCGGCGCGTCAGGAGCGGAGCAACGAACCCGGAGCCAGTGCGACCTGCGGGGGGAACGGCGAGTCAGGATGGACCGGATGAGTGAGGAGGCCCTGAGGCTGAACCTGTTGAAGAGGGGCCTGGAGCCCCCCGAGGAGCGGGACGAGGCCCTGGCCAAGAGGCTGAAGATGGAGGGCCACGAGGCCATGGAGCGCCTCAAGATGCTGGCCCTGCTCAAGCGCAAGGACCTTGCCGGCATGGAGGccggaggaggaggcggaggcggCTTGGCGGAGGGCAAGGGCGGCCCGGGTGCCGGGATGGCCCTGGGGGCCGGCGCCGGGGGGGTGTATGAGGAGAAGATGAATGGGAGTCTGCGAGGGGGCGGACACGGGGACCCCCGGGGGggaagtggaggaggaggaggaggaggaggaggaggcggcggcggcggcggcggcggcggcggtggTGGCggtggaggaggagcagcaggtGGAGGAGGCGGTGGCAAAACGGGCAAAGAGAACATGGGAGATGAGCCGGTGGACATGAGTGCCCGCAGAggcgatCCCGACCGCGAGCGCCGCACCCCCTCCCCGGACGTCATCGTGCTGTCGGACAACGAGGCGTCCAGTCCCCGCGCCTCGACCCGCATCGAGGAGCGCCTGAGGGCGGCCAACCTGGAGATGTTCAAGgggaaGAGTGGCGAGGAGCGGCAGCAGATGATCAAGGCGCTGCGGGAGGAGCTGcggctggaggaggcccggctGGTGCTGCTCAAGAAGCTCCGCCAGAGCCAGCTGCAGAAGGAGAACCTGGTACAGAAGgtGCCTGTAGTGCAGAACACCCCCTCGGCAGTGCAGCCCTCCCCTGTGCACAGCAGCCAGCAGGGCCTGAACAAGCCCCCCCCGCGGCCCGGCATGCACACCCCCGACGCCCACAACCTCAGGACGGTACAGG

Function

NR:

description
PREDICTED: transcriptional repressor p66-beta-like isoform X2

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K23194 GATAD2; transcriptional repressor p66

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012349 True 2025 mRNA 0.68 11 16690822 16706193
TU171182 False 1224 TUCP 0.69 5 16674279 16697391

Neighbor

gene id symbol gene type direction distance location
AMCG00012347 NA coding upstream 3580 16650333 ~ 16670699 (+)
AMCG00012343 aldoab,aldoaa,LOC107581735,LOC103381979,LOC107689930 coding upstream 137034 16530753 ~ 16537245 (+)
AMCG00012342 NA coding upstream 156658 16513859 ~ 16517621 (+)
AMCG00012336 NA coding upstream 272082 16400490 ~ 16402197 (+)
AMCG00012337 NA coding upstream 295292 16367429 ~ 16378987 (+)
AMCG00012350 NA coding downstream 7153 16713346 ~ 16715975 (+)
AMCG00012354 mex3a,mex3b,LOC107756899,LOC107671389,LOC107671388 coding downstream 106592 16812785 ~ 16818439 (+)
AMCG00012360 NA coding downstream 171184 16877377 ~ 16900435 (+)
AMCG00012366 NA coding downstream 271379 16977572 ~ 16984994 (+)
AMCG00012369 NA coding downstream 287286 16993479 ~ 16997064 (+)
G136195 NA non-coding upstream 42015 16620255 ~ 16632264 (+)
G136191 NA non-coding upstream 108048 16565899 ~ 16566231 (+)
G136177 NA non-coding upstream 135130 16538062 ~ 16539149 (+)
G136051 NA non-coding upstream 478165 16193975 ~ 16196114 (+)
G136040 NA non-coding upstream 502184 16171739 ~ 16172095 (+)
G136236 NA non-coding downstream 122857 16829050 ~ 16831802 (+)
G136237 NA non-coding downstream 136374 16842567 ~ 16907105 (+)
G136286 NA non-coding downstream 206042 16912235 ~ 16914695 (+)
G136297 NA non-coding downstream 250496 16956689 ~ 16957295 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding downstream 251265 16957458 ~ 16978213 (+)
AMCG00012348 NA other upstream 25717 16560649 ~ 16648562 (+)
AMCG00012338 ppp4cb,ppp4c,LOC107571759,LOC107590569,LOC107755586,LOC107729194,LOC107567834,LOC107690278 other upstream 241466 16393699 ~ 16432813 (+)
G136076 NA other upstream 414947 16250248 ~ 16259332 (+)
AMCG00012318 ypela,ypel3,LOC103040367,LOC108411043,LOC103393221,LOC106600728,LOC105012807,LOC104942727 other upstream 491189 16176396 ~ 16183090 (+)
AMCG00012324 NA other upstream 531638 16104905 ~ 16142641 (+)
AMCG00012351 NA other downstream 27233 16733426 ~ 16765108 (+)
G136245 NA other downstream 105513 16811706 ~ 16863593 (+)
G136255 NA other downstream 160344 16866537 ~ 16867448 (+)
G136258 NA other downstream 165645 16871838 ~ 16875600 (+)
G136296 NA other downstream 257137 16963330 ~ 17000089 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014250 gatad2b coding NC_007130.7 CM002903.2 41701660 ~ 41724246 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02038896_02051427 GATAD2B coding CI01000054 null 2038707 ~ 2051427 (-)