AMCG00012529 (lix1l,LOC106588578,LOC106570188)


Basic Information

Item Value
gene id AMCG00012529
gene name lix1l,LOC106588578,LOC106570188
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20940980 ~ 20950454 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012529
CAGTTCTGCCCGACCAAAGCCGAGGCAAGACGCAGCGCGGCCAAGATCGCCCTGATGAACTCGGTCTTCAACGAACACCCCTCCCGGCGCATCACCGACGAATTCATCGAGAAGAGCGTCTGCGAAGCCCTGGCGTCTTTCAACGGAAACCGGGAGGAGGCTGATAACCCAAGTACTGGGATAGGAGCCTTCCGGTTCATGCTAGAGTCCAACAAGGGCAAATCCATGCTGGAGTTCCAGGAACTGATGACGGTGTTTCAGTTGCTGCATTGGAACGGAAGCCTCAAGGCCATGAGGGAAAGGCAGTGCTCCAGACAGGAGGTGCTTGCTCACTACTCGCACCGGGCGCTGGACGATGACATGCGCACGCAGATGGCTGCAGATTGGGTGAACCGGGAGCAGGGCGTGTCGGGCACCATCGGCAGGGAGCTGGGGGCGGCCGagagggagctggaggaggccagGCTGGCGGGCAGAGAGCTCCGCTTCCACAAGGAGAAGAAGGACATTCTCATGCTGGCCGTTGGGCAACTGGGCCACGCCAACGCTGCCACCCTGCCTTCCACCTGCTAAAGAGAGAGGGAACGTGAAAAAGGGAGCAGGGGGAGAGGGGTTATACAGCAACCATTCCCTTTTACAGGCCCCATTCTGGGATAATCTTGGGGGCTTTGCTACAGTAGACGTGAGGAACATCTACTGTCCCTTTTCAAAGATCCACTTAAGACATACAAGAATATTGCTTTGCTCGTATTCACCTCAAACCATCACAACATGCAAGTAGGCAATGATTGTAGTCCTTGGGAAGATGCTCAGTGTAAGATTTGGTTTAGGGTATGCCAGCGTTTCACcaactttttttattcaaataaatatttaaaataatgcagcCACAATAGGGGATAAGATCCCAATTGCCCCCAAATGAAATAACGTTTAGCTGCATGCCACCTGAGTAAAGGTAATAAggatcatattttgtattactgggGTTCAGAGACctgcaaaaacattttgtccACTCGGCCGATAGACATTTCCAAGGACCACCTAGCTCCCACCCCTCTCAATATCCAAATCTAACTAAAAACCTGCTTTGATCTGGTCCTATAATGGCACGTTCATATTCTTGTGAAAAGTGTGACATTGGCAGTGCCTGGTGCCAGCTCGAGGTGAGTTTTCTCATTCCAAAAACCGAAAAGAGGCAGccaagatgttgtttttttctgtttctttctggaAAACCAGGTAACAGCCAGCATACAAGCAAGTAATGCTGTGGGTGTAAACCTTTATACCCATTGTTTTGCTGGACTTTTGCAGAACTTGACTCCTTTTCATGAACCCTTTGTTGTAGTGCAAAGCACCACAGGCCCCGAAACTGAACAGCGCAGTTGCCCTCCTCTACACCCCACTGAGCTCTACCCTGGGCAGAGAGGCACATTGTCCTGCAGGTGGTTGTTCCAGTTGAGCTCTCAATCACTTCAACTAAATAGTTTGCTTAATTTCAAATTGCTTTCCTTACAAAGCATTGGAGATGTCAAGTGCCTGATATCGTTTTGTATTTCACTTGAAATCTCTCACTGTTTAAAATTAGTCAAAAGCTCATTCTGTTGAGGCAGACTATGAATTGAATGAATGATTCAGATATGTAATGGAGAGCTGGGTTTGAGCAAACATCAGCAGGACCAGTGCTTTACATTGATCATTAAAGCAAAGGACATCCAGGGAGCCCGCACTATTAACGTTATTTACTTGTCCTACATATGtatcggttttgttttttcagcagcGTTGAGGGGTAGCTCCTGTCCTTTACATTTTGTGGCCGTAGCCGCTGCACGGTTACCCAAAGCTTTGGTGAAACTCGTTGACTTTgctgaaaacagttttttttgtttatttgtttcattgttgcCCAGAGTTTTTTCTTCTACGCAGACTTGCAGACAGATATGTGCTTATGCTAAAATGGACCATATTTGACTACTTTTACTcttttttcgttttgtttttgttttagattctCAGTTTCCACTTCATGGTGTAATTGAAAAGCTTTTATCTTTTTCTAAAGGAGACAACGTGTTCTTCCAAGCACAAGAACATTTGTATAACCTGCCACGCAAACCATGGACGCAATAAATAGAAGaagacaaaaaagacaaaccaaCAAAGATGGCTGTACACCATTGGaaagctgacattttaaaacctcAAATACATTATGGTCAATAAATCAAGACAGTAGAGGCACTGTCATGACTTTTTACCAGCATGAAACAAAAAGCCAGTCTTAAAATGGCCAGGATGTGTCTAATTCTAACCGACTCTAACTAATCAAAACTAAATGCTGCTCTTGCGATGTAATCAatgtaaattgatttaaatgtcataagaacatgagaaagtgtccaaatgagaggaggccattcaccccatcgtgctcgtttggtgtccattaataagtaagtgatccaaggatcctatctagtctattgaAACCTTTATCTTGTTTCCTTGCGATTACATCTGGCCTCTGCAGATTTCCACCTGGTCATCCGTGACCTCAAGATTTCTTTGAGCAAAAAGTACAGTCTGTgtaaggtaaaacaaaaaaacggaAAAGTAGCATTACTGTCTTTCTGATTCTGCGTTTTAAAAGCAAGCCATACGTACCAGTGCAATGCCCAGCTTCCCCACTTTCTGGGAAGAACAACCCTGGattctgtggttttattttttgtattattatgatgttatttgtatgtatattatttcagtaatgctcagtacttattttatgtttttccttttctctttttattattattattccactgTTCCAACAGTCACCTCAGGTTTTTTAGAAACCGCAAATCCAACCACAAAAGAGATTCTAATTTCACAGTTGAAAATGAGcctgttttgaaatgtacatcAGCCTTCTCAATCCATCATCCAGTAATGCATTGatgaagcattaaaaaaacacacctttACCCTCCCCCCTTGCTCTCCTGCAGTCATGCAGCATGTGTTCTGGTTATTATAAtctcttagcagatgcccttatccattgaaaatgacaattgttacaatatatcacattattttttacatatagttccccatttacacagctggatttgtactggagcattctgggtacagtaccttgctcaagggtacaacagcagtgtacCTCACCTGGGATTAACCCCACGAcactccactcaggagtccagagacCTGAACGCCACTACAATTAACTGAAAAAGTTCAATGAATAAAAACGCATCACcctgtacataaatatatactgttaaaGTGGAAAGCATTCCCTCCCTTGATtataaacaatgttatttgccAGTTTCttcaaatcaaatttaaaagcaaaatccaTCACCGCACAATTCCCTGACTCATCTGTAAACCCTTTGCCAGCTTCAGCGAATTATATCGGTGTTCAAAGTGTGGGTAGAGTTCAAAAAGTGTGAGCCGTTCCTTTAGgcacattttgtaatatttgtaaagaaatgaaaatatacaggAGTATCCAGCCCTGGAGTTTTTGTGGTTGATGCATCTTAAACGGTCAACTGAATAGTATTTCTTGGAAATAGAATTGAGAAATGGCAGTATTTAGAGCATTCTTTAGCTCTTCAATCTCAGTGCTGGAAAGACATGTCCTTCTCACTGCTTGAACACACAGGGAGCATAACAGCATTGCCTCTTCCCCTGAAGTGCTGTCTTTACCTCCCTCCAGTCATAGTTTTCACCTGGATTCACCACCAGTCTGTTTCATGGAAAGAGCAGGTGATCCTAATGGTTTGTACATTCAGTGTTTGTATAACAAAAGGCTCTCAAAGTCAACTGCCAGTTAGTGTGCAGGGGGAGGAAATGAAGGTTGCACATGTGCAGCAaaagtctgtctgtcttcattTGCTTATAGTTTTCATAAGGAGTTATGTAGTGCTTAGGCTAGGAGTCCAATACCAAGGTGAAAGGTGAAACCTATAGCTTCCTCTTCCACATCATCTGCAAAATCCttgaaatgaatgtaatttttcacCAATGTATCCTTCAGGCTCTTTGTATaagtaaaaatgcaaacaaatgtgtCAATAATAACCTCCACTTTATTGAAAACCATTACCAGCTATGCCTATTAGTGCAAActctttttgtctttctctaTGAtcttagcatttttttttttttttttagtttt

Function

symbol description
lix1l Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Is expressed in eye; hindbrain; and pharyngeal arch 3-7. Orthologous to human LIX1L (limb and CNS expressed 1 like).

NR:

description
PREDICTED: LIX1-like protein

GO: NA

KEGG:

id description
K16673 LIX1L; LIX1-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012529 True 4234 mRNA 0.42 4 20940980 20950454

Neighbor

gene id symbol gene type direction distance location
AMCG00012535 lix1l,LOC106570188,LOC106588578 coding upstream 10596 20924466 ~ 20930384 (+)
AMCG00012531 NA coding upstream 19072 20919707 ~ 20921908 (+)
AMCG00012534 NA coding upstream 24349 20906056 ~ 20916631 (+)
AMCG00012530 NA coding upstream 93745 20843804 ~ 20847235 (+)
AMCG00012536 NA coding upstream 101514 20833871 ~ 20839466 (+)
AMCG00012533 rbm8a coding downstream 1394 20951848 ~ 20956923 (+)
AMCG00012540 NA coding downstream 62967 21013421 ~ 21038429 (+)
AMCG00012538 sf3b4 coding downstream 93795 21044249 ~ 21050805 (+)
AMCG00012544 sv2a,LOC107592174 coding downstream 154665 21105119 ~ 21109248 (+)
AMCG00012543 sv2a,LOC107592458,LOC107726650,LOC107671386 coding downstream 159084 21109538 ~ 21112947 (+)
G137539 NA non-coding upstream 183716 20757030 ~ 20757264 (+)
G137494 NA non-coding upstream 407021 20533752 ~ 20533959 (+)
G137364 NA non-coding upstream 612156 20321606 ~ 20328824 (+)
G137337 NA non-coding upstream 703107 20170426 ~ 20237873 (+)
G137634 NA non-coding downstream 269745 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 281526 21231980 ~ 21267912 (+)
G137645 NA non-coding downstream 357764 21308218 ~ 21309033 (+)
G137669 NA non-coding downstream 651545 21601999 ~ 21602314 (+)
G137749 NA non-coding downstream 829612 21780066 ~ 21786045 (+)
AMCG00012523 NA other upstream 447193 20481114 ~ 20493787 (+)
AMCG00012521 NA other upstream 495693 20430925 ~ 20445287 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other upstream 518424 20401009 ~ 20422556 (+)
AMCG00012516 NA other upstream 596334 20331081 ~ 20344646 (+)
AMCG00012512 NA other upstream 670061 20246651 ~ 20270919 (+)
AMCG00012539 otud7b,LOC106581836 other downstream 42036 20992490 ~ 21039749 (+)
G137583 NA other downstream 106241 21056695 ~ 21059263 (+)
G137633 NA other downstream 263143 21213597 ~ 21219163 (+)
G137636 NA other downstream 274287 21224741 ~ 21230836 (+)
AMCG00012546 NA other downstream 295209 21245663 ~ 21253003 (+)

Expression


Co-expression Network