G134945


Basic Information

Item Value
gene id G134945
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12160595 ~ 12161253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU169403
CTGTAGATGTGCACGTCTCGGGTCTGGCCGATGCGGTGGCAGCGGTCCTGGGCCTGCGCGTCCATGGTGGGGTTCCAGTCGCTGTCGTAGAACACCACGGTGTCAGCCCCCGTCAGGTTCACACCCACCCCCCCGCTGCGCGTCGACAGGATGAAGCAGAATATCCGCCGGTCTGCGTTGAACCTCTCCATCAGAGACTGAGAGAACGACAGagttaataaaaacacactgacaggAAACTACAATACAGCAGTGtgtgaaaagagagagagggcgatGAAGGACAGACAGGGCTGTGGGTGTCTCTCCCCCGTCTGAGGCACAGCTGGCACAGTGGGGAGTCGGCAGTGAGTTGCAGGGGGAGAATTTCATGTCAGCACCAGCTACCAAATCCTGGCCTACTGCCCTGAGGCCAAGACCTGTTACGATGCtgaatgaggaggaggaggaggaggaggagggccaGAGGATCCAGAGACACTGTCCCACCTGTCTCTGCTCCACGCGTGTGCTGCCGTCCAGCCGCAGGTAGATGTGGCCGTGGTAGTTGAGGAACTGCTCCAGCACGTCCAGCATGCGGGTCATCTGGGTGAAGATCAGCACGCGGTGCCCCCCCACCTTCAGCCGGCGCAGGAGCCGATGCAGCGTCTGCAGCTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169403 True 659 lncRNA 0.60 1 12160595 12161253

Neighbor

gene id symbol gene type direction distance location
AMCG00012168 NA coding upstream 19120 12132247 ~ 12141475 (+)
AMCG00012167 stx1b,LOC108228377,LOC107397241,LOC102220115,LOC107666328,LOC103393442 coding upstream 64656 12085358 ~ 12095939 (+)
AMCG00012161 NA coding upstream 124073 12033347 ~ 12036522 (+)
AMCG00012162 NA coding upstream 131686 11991515 ~ 12028909 (+)
AMCG00012159 fbxl19,kdm2b,LOC107694447 coding upstream 246641 11901547 ~ 11913954 (+)
AMCG00012172 phkg2,LOC106907820,LOC103155081,LOC107089513,LOC101485765 coding downstream 56453 12217706 ~ 12223005 (+)
AMCG00012177 LOC107677883,LOC107563784,LOC107743762,LOC108273672 coding downstream 65061 12226314 ~ 12238811 (+)
AMCG00012178 NA coding downstream 84562 12245815 ~ 12247965 (+)
AMCG00012181 NA coding downstream 237351 12398604 ~ 12403204 (+)
AMCG00012182 NA coding downstream 288458 12449711 ~ 12453677 (+)
G134944 NA non-coding upstream 1166 12159218 ~ 12159429 (+)
G134942 NA non-coding upstream 2137 12148067 ~ 12158458 (+)
G134923 NA non-coding upstream 40935 12119231 ~ 12119660 (+)
G134879 NA non-coding upstream 234464 11924268 ~ 11926131 (+)
G134877 NA non-coding upstream 242330 11916344 ~ 11918265 (+)
G134946 NA non-coding downstream 205 12161458 ~ 12162298 (+)
G134947 NA non-coding downstream 2003 12163256 ~ 12163563 (+)
G134948 NA non-coding downstream 2402 12163655 ~ 12164196 (+)
G135005 LOC104962440 non-coding downstream 198744 12359997 ~ 12360317 (+)
G135007 NA non-coding downstream 201292 12362545 ~ 12362843 (+)
G134898 NA other upstream 129105 12030897 ~ 12031490 (+)
AMCG00012152 NA other upstream 289965 11619177 ~ 11870630 (+)
G134743 NA other upstream 714432 11436379 ~ 11446163 (+)
G134697 fus,LOC103040960,LOC107658502 other upstream 866696 11242229 ~ 11293899 (+)
AMCG00012112 NA other upstream 1099565 11049065 ~ 11061030 (+)
G134955 NA other downstream 11285 12172538 ~ 12172802 (+)
G134958 NA other downstream 19808 12181061 ~ 12181320 (+)
G134968 NA other downstream 30302 12191555 ~ 12192408 (+)
G135026 NA other downstream 404959 12566212 ~ 12716115 (+)
G135025 NA other downstream 452720 12613973 ~ 12648812 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004495 AL929469.1 non-coding NC_007123.7 CM002896.2 5061567 ~ 5061697 (+)