G135582


Basic Information

Item Value
gene id G135582
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14535524 ~ 14538864 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU170332
gtggttttattatttttttaattaactcttctctttgtttctgtttataacGGCTATTCACATTATTATCAACATTACAACGAGTTTCACAGAAAATCATTAACTTTTAAAACGGCTGCTGTTCCATTTTttgggtttttagttttttcagttttttttctcgttttttattttagctcaGTCTTCCTTTTAagttttgttgttattgaagTTTCTGTACAATCCGTTTATAACAACCCCCTCTCCTCCTGTCACTCCCCCCAGCTCCACCCTCCCACACGCACTGACCTCTTGTGGCAGGACTGTGCTATTACAGCCCGTGGTCCGTCAGTGTAACAGTGGCTACAAGGACTTCCAATTGTGTTCATACatgcgcacacacgcacgcacacacatttatatatatatatatatatatatatatatatatatgggaatgTAGCTTGCCGTCCTATGTTTCATAAGAAGGTCATCCATTCAGCTGACTGTAAGACACAGTGTCAGTTCGGCACCTTGCCTCTCATCTTAATATTTtaaccctgccccccccccccactattGCCCGATAACACTTCTTTGTAACAAACTACAACCCCCCACAATGCAGTGCTCCCTGACACCTGTCCTGGAGCCCAGCAGGGAATGTTGGGAAATGTAGTCCTGttatacctttaaaaaaacaaaccaaaaaaaaaactaaaaacaggctcaaccacccccaccctccccctctCATTTTTTGGAGGACAGCGTTGGCAAGAACAGGTGGGTCATATTTTaagtaacaggaaaaaaaatatcaattagtgtgaaacataaatataacaatattaatagttacaaaattatgatattaaaaaaaactctttaaacacaatttacagaACCTGGTGTATGTGATGTTatcgtcattattattattattattattattattattattattattattattagtagtactagtagtagtagtctgGTAGGTGTAAGTGTTGAGCTGCAGGTGAATTAGAGAGCTGCAGTGACACAGCAAGGTGTGCGAGAGCTGCAGTGACACAGTGGTGTGTGTCAGAACTGCAGTGACACAGCAGGGTATGGCAGAGTTGAAGTGGCACAGCAGAGTATGTGAGAGCTGCAGTGACACAGTGGTGTGCGTCAGAGCTGCAGTGCTGTGAGTGGAGTCCCTGCACTGCTCTCACTGCACTGAGACCTGCTACCTCTGGGCTGAGCTCTCACACTGCTGCACCACGCTCACCCACACCCACGCCACAGTATTGCAcgacaggcaggcagggagagagagagagagacaggggggtCACACAGGGCAGATCACTAGCTACATCAGCCACAATGCACCTCCCATCTAATGTCCCTGTGTGCAGAAAGGAGCTGGGGGTTACAGTTCTGTAGTGCAGATACTGACAGATACGAGACTTCTGTATCCTGCCTGCCTGCATGCAACTGTCTTTGTCTATGTGTGTTagtttgcctgtgtgtgtgtttactctAAGGTTGCAGATTCGAAGGTGCTATTCCATATGGgtcactaaaataataataataataataataataataataataataattattataatggaTATGTAACACAGCAGAATCAGTAATAGTAACAGCTAAAACCCTGATTAACATTCATACAGCCCTGCACAGACAGAGTGTCTCCATCtgaatcctctctctctctctctctcttcactgtACAAAGCCTGGGCAGCCTGCAGCTGCACCCCACCCCTGCTATTGCTCACCCATCACACAGGGGAAGGTACGCAGCTCTGCTCTGGCTTGCGGGGAATAAAAACAGCAACTGACCCACTGAGCACACAGAGATGCAGCCAGTGACACAACACTGAAATGGGTGAGCCCTGAATAGCAGGAAAGGAACCATCCCTGGGGCCCACTGTGgcacaaataacaataataataataataataataataataataataataatataaaaatagtattttaaagttaagcccaatgttaatatatattacatataattgtatataattatatataatatattgtacacagacagattaatatatacatatatatatatatagatatatatatatatatacacacacacacaggaatggGTGACAGTAGTTTGATGGTGCGTTCTGTTGCCAATCCTCTCTTGGAGGCTGCTGGTCAGTGGAGTTCAGttcagactggagccagcgcagTGTGGGCTATAGTATAGTATCGTATAGTATAGGGCTCAGATTTCTCTGCTCCCTGTGAATTACATTACACCCCTTAGTGGCAAAATCAGAGAGCACTCAATTCCACTGATAAACAGCctgtaacaaatacatacacatacaaacatacacacacgtgtatatatatatatatatatatatacacacacacacatatattgtcAGGCCAACATAATACTCCATGGCAGCATCCCTTTAAGAGGTCTTAAAGGTGGTAGTTGGAGTTGGAGTTAGTCATCCCTGCCACTTGATGGCAGTGTTGAactcttctttaaaaaaaaaaaaaaaaaaaatccaacaaaataaaaaaaggttttaagtCCTTTGTTTCCCCCACAAAATAAACgatgcatttttaaagtcttCCAGTACAgacctatatatttatttacatacatacactccCCTGGCAGACCTCCCGACGCCAACACACATTCTGTCACGGTATATACTcccctcctctctgcctctcggTCTCTAGTGTTTACTACTATTGGCCATAGTGATTGACTGACACCGACTGCTCTCTCTCGCCTGATTATCAGCACTCCTCCTCCGTCAGTGTGTCGTGTCTTTCTGTGCTTCTTTTCCCTGTGCAGATCTACCCTTTCTCTGACATTTTCAACTCATTCAATGTCAACCCCatactctctctttctctgtgtgtgtagtgcgttcgtactgtagtgtccagtcagttggtgtgtgtgtgtgttaaagccCCTGTCCTTCTACccactgcagtgtccagtcagtcagtgtgtctgtactgtattaacccccaCCACCTCTGAGTGCAGTGTCAGTGTAACGTAGTGTCCAGTctggtcagtgtgtctgtcctgcactaatcctctctctctctctcaatgtaaCGCAGTAACCAGTCAGTGAGTATCTAGTTCACTGTCACTGttcacccctctccctctccctctctctctccctctctccctccctagGAGTAGGAGAGGTGGGAGCCGTTGGAGATGTGCGAGGTGACCGACGTGCTGCGGCTCAGGCCCCCCTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170332 True 3294 lncRNA 0.42 3 14535524 14538864

Neighbor

gene id symbol gene type direction distance location
AMCG00012275 NA coding upstream 83295 14445064 ~ 14452229 (+)
AMCG00012278 NA coding upstream 92430 14438708 ~ 14443094 (+)
AMCG00012277 NA coding upstream 100638 14427959 ~ 14434886 (+)
AMCG00012274 NA coding upstream 111884 14416007 ~ 14423640 (+)
AMCG00012276 NA coding upstream 125084 14399113 ~ 14410440 (+)
AMCG00012279 NA coding downstream 28503 14567367 ~ 14570192 (+)
AMCG00012284 asphd2,LOC105891569,LOC107687974,LOC106585499 coding downstream 85655 14624519 ~ 14627965 (+)
AMCG00012285 LOC106579440,LOC106676660,LOC101486406,LOC100704476,LOC105890664,LOC108425940,LOC107578711 coding downstream 99106 14637970 ~ 14638967 (+)
AMCG00012293 NA coding downstream 114575 14653439 ~ 14655115 (+)
AMCG00012298 NA coding downstream 375720 14914584 ~ 14915573 (+)
G135575 NA non-coding upstream 13919 14518216 ~ 14521605 (+)
G135542 NA non-coding upstream 161579 14373040 ~ 14373945 (+)
G135540 NA non-coding upstream 167187 14368049 ~ 14368337 (+)
G135506 NA non-coding upstream 303261 14226990 ~ 14232263 (+)
G135366 NA non-coding upstream 579219 13927988 ~ 13956305 (+)
G135594 NA non-coding downstream 24712 14563576 ~ 14576998 (+)
G135595 NA non-coding downstream 31511 14570375 ~ 14610737 (+)
G135606 NA non-coding downstream 58266 14597130 ~ 14601583 (+)
G135625 NA non-coding downstream 124888 14663752 ~ 14707073 (+)
G135634 NA non-coding downstream 136988 14675852 ~ 14677500 (+)
G135566 NA other upstream 99796 14434965 ~ 14435728 (+)
AMCG00012267 NA other upstream 145839 14388038 ~ 14389685 (+)
G135544 NA other upstream 156829 14377672 ~ 14378695 (+)
G135541 adprh,LOC107387950,LOC101076629,LOC105024377,LOC103481379,LOC103381590,LOC107094293 other upstream 157873 14375633 ~ 14377651 (+)
AMCG00012268 NA other upstream 238865 14246763 ~ 14296659 (+)
G135573 NA other downstream 45260 14584124 ~ 14585770 (+)
AMCG00012294 NA other downstream 171380 14710244 ~ 14726783 (+)
AMCG00012300 NA other downstream 425180 14964044 ~ 15245994 (+)
G135649 NA other downstream 449434 14988298 ~ 15009803 (+)
G135670 NA other downstream 580861 15119725 ~ 15623881 (+)

Expression


Co-expression Network