AMCG00012785 (LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266)


Basic Information

Item Value
gene id AMCG00012785
gene name LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8041802 ~ 8077147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012785
ATGAGCAGGTGTCTGTTGGCGCTAGCGGAGCCGAGCTTTCCCCTGAGTCGACCCCTTTTGCTCCAGAAAGGCAGCTTCCTCGTGGTGACATCTGTCACTGAAGCAGTGCACTCTGGGttgtTCGACCGTGTTCGAGAAGAAAACCCAGAGTTCCATGAGAAAATCATTCCCATCAGCAGTGAGCTGACCCAACCTGGCCTGGCCATCAGCCCAGAGGACGTAGAGAAGCTGAAAGCCTGTATTCACATCGTCTTCCACTGCGCTGCCACTATACGCTTTGATGAACATTTGAAGCACGCCTTGCTGCTGAATGTAATCGCAACACAGCAGCTCCTGGGCCTGGCTCGGCAGATGGAGAAACTCGAGGCCTTTATCCACATCTCCACCGCCTATGCAAACTGCAACCGGAGACATATCGACGAGGTCATCTACCCGCCGCCCGTGGAGCCCAGGAAGCTCATCGAGTCCGTGGAgtGGATGGATGAGAGTATCATCCGGGACATTACCCCTCGTCTGATTGGGGATCGACCCAACACCTACACTTACACCAAAGCCCTGGCAGAGTACGTGGTCCAGCAGGAGAGCGAGAAGCTTAACATCGGCATCATCAGGCCCTCCATCGTGGGCGCCAGTTGGCAGGAGCCGTTCCCAgCAGGAAAGGGGATCCTGAGGACCATGAGGGCCAATAACGACGCCGTGGCGGATTTGATTCCAGTAGACGTGGTCATTAACCTCACACTGGCAGCTGGCTGGTACACAGCGGTGCACAGACCAAAATCAGCTCTGGTGTACAACTGCACTACAGGTGGCATTAACCCCTTCCACTGGGGGGAGATTGAATATCATGTCATGTCTACCTTCAAGAGGAACCCACTGGACCAGGCCTTCCGAAGACCCAATGCCAACATCACATCCAACTACCTGATCAACCAGTACTGGATGACTGTGAGTCACAAAGCCCCAGCCTTGCTCTACGACCTCTACCTGAGACTGTCCGGTCAGAAGCCAAGGATGATGCGCATCTTCAACCGACTCCACAAAGCCTTGATGCTTCTGGAGTACTTTAGCAATCAGTCGTGGGACTGGAACTCAGACAACATGAGCATGCTGTTGGGCCAGCTCAGCCCAGAAGACAAAAAGaTCTTCAATTTTGATGTTCGTCAGCTGAACTGGCCTGAATACATTGAAAACTACTGTATAGGCAccaaaaaatatgttcttaatGAGGACATGTCTGAGCTTCCAGCAGCTAGACAGCATCTGAAGAAGCTGAGGAACATTCGCTATGCCTTCAACACGGTCCTGCTGGTATTTATATGGCGCATCTTCATCGCCAGGTCGCAGATGGCCCGTAACATCTGGTACTTCGTGGTCAACCTCTGCTTTAAgttcctgtcctatttcaggGCATCCAGCACCTTACGGCACTGAAACCTCCTCCCGAGCCACACCCACCTCTCTACATCCAGGACAAAGCTCGTCCCGACACAGCCAGCCCACTCCTCTGGGTTACCAGCACCCCATCTCACTTCAGAAGCTGTGTGTTCCTGTCAGCCTTCTAGTCTAAACAGCCAAGTGAGCtctagaaaaagaaaaaaatatatataaaaacggAAGGATGGTCAGCCATTAAATGACTAAATTTGAAGTCAAAATGTTCCTTAAAAAGTTGGTTCAGTACTCGAATTCTTGGTCTTCTACGTCATACAGCAAAAACACCTCCACTTCATTTTTGATACCCATTCTTTTTCTAATGAAGGCTTTCCTGATAAACAGGTGGTGGGGggttaaaacaacaaaacaaatatgcaacAAATCCCATTGTATGGTGGATAGTTTTGTGCATCTGTAGCGATGTCTTTCGTCTAAATACAGTTACAATGCCTAGAAATTTGGTCACAATGTGTGGGATACTTAAATAATGATGTTTTCCTCATTAATTGTACATGACGTTTCATGcttgaatttattatttttcttttttggtttgatttctaTGTATTACATGATCATCTCCTCCAGTTTGTACTGAAAACAAGCTACtaaccttttaatttaatcattctAATATTGTATCTGCAAACACAATTTTCCTGTTGGTGTTTGCTATGGAGGGGGGCAGTGTTATGTATAAATCTGAATTAGActatctgtaaatatttaaaagctatcttatattattcttatataGAGAACCAAACAACAtggaaagatgtttttttttcttttctgttgatGGATTCTTCAGTGAGTGGGAGAACAGCTTAAAAGCTTTTTATGGTCACCTCATATTTAcctcttattttctttatggaGAAAACGAACTGAATCCGAATCCGAATTCAGAAAGCGGTTAGCGTAACACTAGTCCAGTTTGCAGCACAACTGCAGAGACCATGATTGGTGGGAATTGTAGACCACCAATGATATTTAAAGGAAGGAGGTCTAAAATTAGCACTGTTCGGGGTCTGTGAAAGCAGATGTTTTAGTTCAGGTATTTGGGGGTGAAGGAGCAGTTTAATACTTCACCAATACAGAGGCTCAATGCAGAGagaacataatacaattacacattccCGGTGTATTGGATTTATAGCTCAAGAATACTTTGGACTACTGCTGCTTACATATCCACACTGAGACTGGTCAGTACAATGCTTTAGATCTTCTTACACTTACCAAGGCCGCCCAGTTTTCTCGCTGCTCCAAAGAATCTGATGAGATAATGCAAGTGTTATTTGTACACAAAACAGGGCCTGTACGACAAAACACATCCTCTTCAGTGTTCGGTTTAATTTTGTTATGGAATAACCAGTTGTTCCTTGCTGTATGATTCACAATCAGACCAGTGCACTATGAACTCAGATTGGTCACcaatgtgtttgaaaaaagtcaaatctataTGTATGTTATTGCCATTTGTTCCACGTTTTAACAGCTGTGTCCTTCACTGTTGCTCCTCTGAAAACCCTTCCATTTCCCCCTGCTTGGCAATGtcaataaactgaagagaaaTCGTGTTAGTGTGCCAGCCATCATGCTTCATCAACCCCATATACTGTCAGTGATGAGACCTGAGCACGTGTAGTCTTTATCCTAACATGAAGACTGAACACATTGCAGCAGCAGTGTTTTCACCTCAGAAATTCCTACTTGAAGTATTTCCCAGGGCTACATTGATGCTGTACTAGTATTAGATccggggttaaaaaaaaaaagttctttGCACTGGAATGATACCATGTATTAGTCATTCTGTTtgtaattgaattaatgaaatACTAAGCAAAACCAGATTGAAAGCGATTCTAATAAATACTATCCAAATGCTTTGTGAAACCCTGCcataaaacaaaagtgcaatcTATGCCCTTCATTAAGTATGACAATGTAGTAGAAGTAGGAATTTTGAACACAAATGGccaattcacatttaaatgagAAGTCATGGTTGGCTtcgttttcttcttcttcttcttcctttgtGTTCATACTTTTGCTTTCCCCCTGTGCACAGGTTTTCTatgcataaaaaaataccaaaatgatttattttcctggaactgtaaatatttgtattattccaaATGTTCAGACTAGATTAGTGAGCCTAGTCTTTGCTGTTAGAATAGGTTCAGCACTTTGTTGGGCGTCTTACAGCATCCTAAACCTACCGTACCATTTTTTACAGCATGTTTGTGATCTGAGAGATTACTGTCTGCCTAGGATGGGTTTGAAAGAGTGGATTTATCCCCATGCTTTGAAATTGATCTTGTGATTTTAGACAATAATACATGACATGATCAGTTTCtacagaacaaaactaaaagtgCCAAACCCACTACAGGAAGCATGTGAATACCAGGGTATCTGTGCCCTAGATTTTCAAGCTTCAAGTTCCTTGTGATTCTACAAGGACCTATCACTGCCCTTTTGTACATGTTCTCCCCTCTGTACTAATGACCAGACTTCCTATTACCACCAAAAAGCCCAAATTGTCCAATACTACCCATTTATGTTGGAAGAGTTATAAtcctatatataatatattgtaacaagaGCCATTTTAACAGGAAAGTAACCAGCCAGGTGTGATGAATGGAGATAAACCAATGACATGGGCGACTGTGATTGTAGCTCACGAGGTGAATATCTTTGACTGCACGAcagcaaaacaaagaataagaacataaaaacaataatggaaAGGTAGAAAAACTTAACTAAAATCAGGAAACAGTTGAAGATTAGAGGAACGTTACTCCTGCATTCTTGTATTTTGGTACAACAAACACCAAGAGCAACAAAATACAGGACACACACTCCCAAAAGCTACAACCATGTAAGGCAGGGTGCAGTGTAAACTTATCGCAGTGCTataatgctgtgtttttatatcGAATGTTAGAATGGGCTCCTTTGTAATAATAAGTTAACTGTCTACTCTTCCTGTTCACCCTTTCGTAACGAATTCAGACCACTGCTCAGGTGAGATCACCCAGATCCACAGCCTTCCAGTCTGCAGACAACCGACTGTTTttttgagtttcttttttcgttgttgctttgtttttatatacttaGGATGAATGCATTTTGAATGGACAGTTAAAAACAAGAGGTCAATGTTATACACACAGCTCGACATGCCTGGAGAGTCCAGTAAAGCACATGTCCGTCATGTAAGCATCTGCTGAGATGAGAACTACGACAAACAGCATTCCAGACATATCCGTTTTCTATGACGTGTTAGAGAAGCACCGACTGTCTTAAGATCCATCAAACTGGAGCAAAATGAAATtcagaaagcatttaaaaacaaccgTTTCTGCCAGTGTTCTGAACCGTCCAGATTAATACTGCCATGGTTAGCCAATTACTGGTatccaatttaaaatgcacaccCTCCAGTAGATTTGCCTTGCAGATTTTACagcaaactattttttttatttccagcaaAGTGGAATTGAGCGTGCTCAGCTGTGGCATGCATGCTGATCACATTAGAGACGTGTGTTTTAACATGATTGGGCTTCGATTTAAGTTTGCTTCAAAAGGCAACCTCTTAGACTATGTAAATGCATGCACTAAACAGATGAAGTGGACtcttattacaaataaaaattactCCATATTCAGTCTATTGATTGCATGAATTTATACTTAATCTACCTTATCTGAATGCACAATCCTCCAGTATTAATGAAGAAAGTGTTCATGGAAACAATTCCATCAGGGCTTATTTTATCTTCATCCAAACTAACGAaaccctttcttttttttgtatgtgggatattcttttttattctattttcacGGGGGGATTTCACATTGAATCTTTCATTGATAAAAGTTGTCTGATTACAGAACAGTGTCTCATCTCTAGAGGAGATGTctctgaagaaataaaaactcaataaaaaca

Function

NR:

description
PREDICTED: fatty acyl-CoA reductase 1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012785 True 5428 mRNA 0.42 10 8041802 8077147

Neighbor

gene id symbol gene type direction distance location
AMCG00012786 NA coding upstream 7403 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 82827 7936380 ~ 7958975 (+)
AMCG00012777 NA coding upstream 176972 7862259 ~ 7864830 (+)
AMCG00012775 NA coding upstream 209014 7821972 ~ 7832788 (+)
AMCG00012768 NA coding upstream 586396 7426981 ~ 7455406 (+)
AMCG00012798 NA coding downstream 365257 8442404 ~ 8443642 (+)
AMCG00012807 NA coding downstream 494311 8571458 ~ 8607377 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding downstream 718021 8795168 ~ 8799438 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 746350 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 776934 8854081 ~ 8872158 (+)
G39737 NA non-coding upstream 132636 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 306534 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 328559 7708867 ~ 7713243 (+)
G39586 NA non-coding upstream 823343 7213745 ~ 7218459 (+)
G39560 NA non-coding upstream 1143572 6897997 ~ 6898230 (+)
G39838 NA non-coding downstream 191847 8268994 ~ 8269221 (+)
G39951 NA non-coding downstream 589607 8666754 ~ 8667464 (+)
G40022 NA non-coding downstream 973940 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 1014167 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 1187731 9264878 ~ 9265093 (+)
G39709 LOC101154678 other upstream 205588 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 313974 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 660243 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 1523819 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 1984970 6053148 ~ 6056832 (+)
AMCG00012797 NA other downstream 258751 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 459086 8536233 ~ 8569891 (+)
AMCG00012818 NA other downstream 1006515 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 1035313 9112460 ~ 9130211 (+)
G40224 NA other downstream 2359760 10436907 ~ 10444447 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02074798_02093516 FAR1, FAR2 coding CI01000066 null 2074798 ~ 2093516 (-)