AMCG00013386


Basic Information

Item Value
gene id AMCG00013386
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30080614 ~ 30083441 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013386
ATGCGCCCGAAGAGGGCCGAAGCGAGGTCGCCTCAGTGGGCGTTGAATATGGTGACGTATGAGCGGAGTCGTATCCCGCCGCTGCCCGGGCTCGGCCTCATTCTGCAGGCGGACGCGGAGGAGATGGGTGTAGCTGAGCCGTGGAAAGGCATGGCCCGTGGCGGGAGGCCATTTTGCACACCCTCCCGACGACGCAATCCTCGCACAATGGGTGGCAGGCTGGTGGCTGGTGCTTGGGGCTGGTCCTTCACTCGCGGAGGTGCAGAGCAGGCATCAGACAGGCGAGGCGGCCACAGGCAGATCAAGAACCTGAGGAATGTGGTGAAGGACAGTCCGGTGGGGCGACACCGCAGTACCTTCATGGAGCTGCAGCAATTCATGGCCCCTTTACACTCGCACTGCGGGgCCCATTAA
>TU54953
CTCATTCTGCAGGCGGACGCGGAGGAGATGGGTGTGTGTTGGAAATGGGCGCCGGGACGCGTGTCCTTGTTAAACCCGAATGGGGTTATACTGCACCAACACGCCTCGGTCTAAATACAGACTTGTGATGTAGCTGAGCCGTGGAAAGGCATGGCCCGTGGCGGGAGGCCATTTTGCACACCCTCCCGACGACGCAATCCTCGCACAATGGGCTGAGACGTGGTCTGTCATCATGTGACTGAAGGATGGGGGTTTCAGGGTCAGCCTGGAGAAGCATGGGTGGCAGGCTGGTGGCTGGTGCTTGGGGCTGGTCCTTCACTCGCGGAGGTGCAGAGCAGGCATCAGACAGGCGAGGCGGCCACAGGCAGATCAAGAACCTGAGGAATGTGGTGAAGGACAGTCCGGTGGGGCGACACCGCAGTACCTTCATGGAGCTGCAGCAATTCATGGCCCCTTTACACTCGCACTGCGGGGTGATGACAGGGTGGTACAGACCAAAGGGACTGCCATGTGGCAGagttttgtattctgtttctcCCACTTTGGTTCAATGCTTTCATGTCATGcctgagaaatacattttgaa
>TU54954
CTCATTCTGCAGGCGGACGCGGAGGAGATGGGTGTGTGTTGGAAATGGGCGCCGGGACGCGTGTCCTTGTTAAACCCGAATGGGGTTATACTGCACCAACACGCCTCGGTCTAAATACAGACTTGTGATGTAGCTGAGCCGTGGAAAGGCATGGCCCGTGGCGGGAGGCCATTTTGCACACCCTCCCGACGACGCAATCCTCGCACAATGGTAATGTTCCTTTAACCAGCATGAACGATTTCTGTTATCTAACGATCCGAGCCGATGATGATCTAAAGTTATCCCTGTCTGAACTCAGTGGTGAGGATACCGTTTCCCTCTGAAGGCTCCAGTGCAGTCATGGTGGTGTGCATGAGAGTAGTAGCTCCCGGCCAATAAGACTGGAGTGAAGGATGGAAACCCATCTATAGCCTAACGCCAATAGCAGTGCATGTCCCCTGTGTGACTTGTGTATTAATCGACCCTGTCTGCAGTTTGAGTGCTTTTAGCAATtctatatataatgtatcttTTGGGTAAATAAGTCTGAGTGCCAACTGACCTGACTTCACTATTCTTGTTTGCAGGGCTGAGACGTGGTCTGTCATCATGTGACTGAAGGATGGGGGTTTCAGGGTCAGCCTGGAGAAGCATGGGTGGCAGGCTGGTGGCTGGTGCTTGGGGCTGGTCCTTCACTCGCGGAGGTGCAGAGCAGGTATGTGGGACCTGTGGTGGTTCGGTTTATGCTTAAAAGCGAAAAGGTGGAAAGCTCTGACCCCTTGAGTGTGGCAGTGCCTGTTGTTAGCCTGTGATGATTCAAGTTATCCCTGTCTGAACATTGCTGTGGACTCTTGGTAATCTGAGGCCTGATGGATCCCATGGTCATGGAATTTGAAATTGCATTTTCCAGGCATGGATTTATatttccaaaaaaatatatatatatattcatagttTTGTGTGCAGTGAATTCAGTAATCCCCTTCCCAGCCTGCAATGAGCTGTTTCATAGATGAGCTTCCCTAGGAGAAAGGCAGTGTTTGAGGTTCTGCTGAGTGGATTAATCCAATATGCGTTGATCCTACGAACAGAAACAATCCCACATTCAAACCCATCATCCTGTCATCCAGCCAAATTCCTGCTAATACTGAACTAAATGtgcagtttcatgcatttaaattagaaaaagcacatcTCATAATAAGTGCACTTTGTGAGAGATCCAGAGCAGTGCCTCCCTCACATGAATCTCAGAATTTGGGGAAACGTCTTTCTTTGGAcaggattaaaataatatgatgcTGCTGAGCTGTGGCTCCATGTCTTGCTGTACGTCTCTGTCCTCTCCGGTGCCATTCTGCTCTGAACTCCCTTTTCTTTCCTCCCCTTTCCCAGGCATCAGACAGGCGAGGCGGCCACAGGCAGATCAAGAACCTGAGGAATGTGGTGAAGGACAGTCCGGTGGGGCGACACCGCAGTACCTTCATGGAGCTGCAGCAATTCATGGCCCCTTTACACTCGCACTGCGGGGTGATGACAGGGTGGTACAGACCAAAGGGACTGCCATGTGGCAGagttttgtattctgtttctcCCACTTTGGTTCAATGCTTTCATGTCATGcctgagaaatacattttgaa

Function

GO:

id name namespace
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013386 False 414 mRNA 0.63 5 30080614 30083441
TU54953 False 586 TUCP 0.56 5 30081036 30083345
TU54954 True 1622 TUCP 0.48 3 30081036 30083345

Neighbor

gene id symbol gene type direction distance location
AMCG00013385 NA coding downstream 77732 29991300 ~ 30002882 (-)
AMCG00013376 LOC107081327 coding downstream 145444 29931650 ~ 29935170 (-)
AMCG00013372 psmd12 coding downstream 277371 29796583 ~ 29803243 (-)
AMCG00013373 LOC106564877 coding downstream 286488 29746227 ~ 29794126 (-)
AMCG00013361 NA coding downstream 631133 29445941 ~ 29449481 (-)
AMCG00013389 rhbdl3 coding upstream 8421 30091862 ~ 30100704 (-)
AMCG00013391 NA coding upstream 34359 30117800 ~ 30126501 (-)
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding upstream 43256 30126697 ~ 30153358 (-)
AMCG00013392 NA coding upstream 71821 30155262 ~ 30164478 (-)
AMCG00013404 NA coding upstream 238824 30322265 ~ 30332700 (-)
G43919 NA non-coding downstream 581041 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 959295 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 962653 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1341841 28737957 ~ 28738773 (-)
G43724 NA non-coding downstream 1362674 28716291 ~ 28717940 (-)
G44086 NA non-coding upstream 5362 30088803 ~ 30090147 (-)
G44230 NA non-coding upstream 223585 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 301245 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 450530 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 456872 30540313 ~ 30562691 (-)
AMCG00013384 NA other downstream 18980 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 52384 29926383 ~ 30028230 (-)
G43869 NA other downstream 826298 29253396 ~ 29254316 (-)
G43684 NA other downstream 1612708 28467312 ~ 28467906 (-)
G43594 NA other downstream 2007827 28068213 ~ 28072787 (-)
AMCG00013390 NA other upstream 82376 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 203201 30286642 ~ 30290867 (-)
G44243 NA other upstream 316446 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 372286 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 385189 30468630 ~ 30482326 (-)

Expression


Co-expression Network