AMCG00013392


Basic Information

Item Value
gene id AMCG00013392
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30155262 ~ 30164478 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013392
TTAACCTACAATAATCGTTCTTTTGTGCTTCTGTGCATTGTCCCGGTTTGTGTGTAGAGGCGGTGTAAGAGGAACCGGCTCCGGGCGGCTGTGCGCAGAGTGAAGTATCCGCCGCTTCGCTACTTTCGCAAACTCGTTCATTGTCGCTGTCGCCCCGCAACGCGCACTCACTTCCTCTGGCCAGACAGGAGCGCACACCGGCTCTGCGCATGCGCATGCGGGAATCACAGCTGCGTCTTCACACGGAGTCGGAGCGGAGAGCAGCCCCGCCCCGCACCGCCCCGCATCGCCCCGCACCGCCCCGCACCGCCCCTACTGTCCTCGGTGCCCGGAGAGCAGGGAGTCAAAGGAGAGATCGGTAAAGGGGTTGAGGGGTGGGAGAGCCACACAGAGAATGACGACACCTGCCTGGCACACAGGTGAGACCGAGGGAGCGAGCGACGACACCTGCCTGGCACACAGGTGAGAGATGGACTTCTCTTGTGCCTGGAAGTCGCTGGAGATGTATGGACCTGCTCGGCGACCAAGGATGCAATAGACTCTCCCACACTGCTCTGCGCCGCTTGGACAGTGCTCTGGACTTTCTGTATAAATACattccaatttaaaattgtttgtattgtattactgtgTGTGAAGAGGATGCAGCGGTGACTATGAGGCGCCCTGCCTCGGCACGGACCTCGGTCGGCAGCAGACACTGAGAGACCCGGGCGGGAGTGGGAGTGTGTGGGACCCGGAGCAGCAGCCATGGCTGACCACGACCACAATAAGAAGCAGCTGCTGGAGTTATTGAAGCAGCCCGGCAACGGCGCCTGCGCAGACTGCGGGACGCGGGACCCGGACTGGGCATCCTACAAGCTGGGTGTGTTCATCTGCCTGAACTGCTCGGGGACACACCGCAACCTGCCAGAGGTCAGCAGGGTCAAGTCCATTCGGCTGGACTTCTGGGATGACAGCCTGGTGAAGTTTATGAAAGCCAATGGGAACTCCATTGTGAAGGATACATACGAGAAGTCCGTCCCGGCGTTCTACTACCGGCCCCAGGAGAGTGACTGTCCAGTGCTGAAGGAGCAGTGGATCAGAGCAAAGTACGAGAGGAATGAATTCACTGGGGACAACGCCATGGCCCAGGAGGCCTACAGCTCAGGGTCCTACGAGGGGTTCCTGTGGAAGAAGGGGCGCGACAACGGGCAGTTTCTACAGAGAAAATTCATCCTGAGCGAGAAGGACTTCACTCTGAAGTACTACACCAAGGAGGAGTCCAAAGGTCCCAAAGCCGTCATCTACGTCAAAGACCTCAATGTCACCTTCCAGCCGGAGAAGATCGGCCACGCCCACGGGCTGCAGCTCACCTACCTGCAGGACGAGCACACCCGGAACATATTTGTGTACCACGACAGCGGGAAGATTGTGAACTGGTTCAACGCCATCAGAGCCACGCGCTTCTCCTACCTGAGGACTGCCTTTCCCACCGCCAGCGATAGCGAGCTGAAGCCCTGGATATCTCGGAATTACTTAAAGGAAGGCTACATGGAAAAGACCGGTCCGATGCAACGGGAGTCCTTCAAGAAGAGGTGGTTCATCCTGGACTCGCAGGATAGGAAGCTGCTCTACTTCAAAGACCCACTGGACGCAGTAGAGCTGGGCGTGGTGTTCCTGGGCCCGGAGGAGCACGGCTACGCGGTGCGGGACAGCCAACCACGGACGGCGCGCAGGAACAAGTGGAAGTGTGGTGTCGCCATGGAGACGCCGGACAGGGCGTTTCAGTTCATGTGTGAGAACGAGCGGGAGCAGCGCGAGTGGATGGCGGCACTGCGGCAAGTCATCGCCAGACCCATGATCCCTCAGGACTACGCCACCGAGGCCAATGTGAGACGGAGACGGTGACCCTgcaagggagggagagaagagtcGGACAGCGGCACCGTGGTGGACACACTTCCAACTGGACCAGAGGGGTTAGCTCCGCAGCGGCCGTGGGCACTGCTGGCTGGCACCACTTCACAAagcctttaaatcatgttaaaatggTGCCTAGAGCCCCgagtaaagattttttttacatgacCAAGTTGTTCCCTGGGGGGTCCCCAAGTGTGTAACGTTTTCTCTCAGTGCTGCCCTTGTAGGCTGGTGGTGGTATTTTGGTGACTTCCCACCAGTGGTACCCAAACACCGTCCTGGAGCCCCGATCCAGTACGTTTTGTCAGTCACTGTAAATCGCTAATTTCGACAGATTAGGAACATGtggaagttattgatcaattaagcaattaacttgttcagttaagggaattctggtcactgagggctgaaaagggtggttcattttctttataccaaGTCTCTACAGAACTTCATTTAACAAgtcacctgcttaattgatcacattgaaatggcTCCAGGTGTTCAGAAATTGATTATTAAAGGTTATCTGTGGGAGCGGGGCCTCGAGGACGGGATTTGGGCAGCACTGCGTCACACACTTTCATTTCAAGGCAGCTGGGAAGTGTTTTGATGGAAACCATGTAAagttgaaaataattttaattcggaacattttattgtaattgtaatattacaaataataataaaaacattaggaaaaaaaagagtaataaaacatttgaatccTAACCACTTTCATCCAGAgcccatttaaaaacactatcGTTACAGTCATATGTCACActgcattgtatttataataaaatgtttacaatcttaattttttaattcttaataaataaatctgaattgaTAAAATAGTATAGTATTCCC

Function

GO: NA

KEGG:

id description
K23781 ADAP, CENTA; Arf-GAP with dual PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013392 True 2784 mRNA 0.53 12 30155262 30164478

Neighbor

gene id symbol gene type direction distance location
AMCG00013393 rhot1a,LOC108430568,LOC107729179 coding downstream 1904 30126697 ~ 30153358 (-)
AMCG00013391 NA coding downstream 28761 30117800 ~ 30126501 (-)
AMCG00013389 rhbdl3 coding downstream 54558 30091862 ~ 30100704 (-)
AMCG00013385 NA coding downstream 152380 29991300 ~ 30002882 (-)
AMCG00013376 LOC107081327 coding downstream 220092 29931650 ~ 29935170 (-)
AMCG00013404 NA coding upstream 157787 30322265 ~ 30332700 (-)
AMCG00013403 NA coding upstream 168970 30333448 ~ 30340461 (-)
AMCG00013410 NA coding upstream 266186 30430664 ~ 30436741 (-)
AMCG00013419 NA coding upstream 343473 30507951 ~ 30521671 (-)
AMCG00013420 NA coding upstream 359429 30523907 ~ 30533879 (-)
G44086 NA non-coding downstream 65115 30088803 ~ 30090147 (-)
G43919 NA non-coding downstream 655689 29497710 ~ 29499573 (-)
G43831 NA non-coding downstream 1033943 29119373 ~ 29121319 (-)
G43834 znf207,LOC107753267 non-coding downstream 1037301 29115222 ~ 29117961 (-)
G43725 NA non-coding downstream 1416489 28737957 ~ 28738773 (-)
G44230 NA non-coding upstream 142548 30307026 ~ 30310766 (-)
G44213 NA non-coding upstream 220208 30384686 ~ 30455606 (-)
G44261 NA non-coding upstream 369493 30533971 ~ 30539317 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding upstream 375835 30540313 ~ 30562691 (-)
G44264 NA non-coding upstream 386911 30551389 ~ 30552050 (-)
AMCG00013386 NA other downstream 71821 30080614 ~ 30083441 (-)
AMCG00013384 NA other downstream 93628 30040205 ~ 30061634 (-)
G44034 ddx5,kpna2,LOC102776273,LOC103469782,LOC108432045,LOC108261381,LOC100304957 other downstream 127032 29926383 ~ 30028230 (-)
G43869 NA other downstream 900946 29253396 ~ 29254316 (-)
G43684 NA other downstream 1687356 28467312 ~ 28467906 (-)
AMCG00013390 NA other upstream 1339 30165817 ~ 30184424 (-)
AMCG00013405 NA other upstream 122164 30286642 ~ 30290867 (-)
G44243 NA other upstream 235409 30399887 ~ 30423025 (-)
AMCG00013409 LOC107590438 other upstream 291249 30455727 ~ 30464091 (-)
AMCG00013412 NA other upstream 304152 30468630 ~ 30482326 (-)

Expression


Co-expression Network