AMCG00013421


Basic Information

Item Value
gene id AMCG00013421
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30623976 ~ 30635826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013421
CCAGTGACGCCCCCCTATGAggtgacccccccaccccacacccaGCATCGTTGGCAGCAGGACTAAGGGATGTCACAGCTCTTCCTCCTCCTAACTCTGCTTTTACTCCAGATCAACACCCAGGTCCTGTCAGCTCAAATTCTGAGGAACTTGATTGACGGCTGGGAAAGCTACAAGGAAGAGTGCCACCACAACAACACCATCGAGCCTCCCGCGACTGGTCTAGTGTGTAATCGTACCTTGGACCGGTTCGCCTGCTGGCCAGATGGGCAGCCCAACACCGTGGTGAACGTGTCCTGCCCCTGGTATCTGCCATGGCACTCACAAGtcaAGCATGGCCATGTGTTCCGGGAGTGTGGAGCGGACGGCCAATGGCTGCCCTCGAAGAACATGAGCGAGTGCACCCAGGGCGAGTACGACGAGATGTATGGGAAGATTCTGAACGGCTTCCGAGTGATGTACACGGTGGGCTACTCTCTGTCCCTGGCCGCTCTGGTGTTGGCTCTGGGCATCCTGTTGGCGTTCAGGAAGCTGCACTGCATGAGGAACTACATCCACATCAACCTGTTTGCCTCCTTCATCCTGCGCGCGCTGTCCATACTGGTGAAGGATGAGCTGCTGTACATGCCCCCCATGAACATCAGTCAGCACGAGGATGAGCTGGAGGTCTGGATCAACAACAGCAAGACTCAGTCTCAGATGGGCTGCCGGACCGCCCTGGTGATGATGCAATACAGCATCGTGGCCAATTACAACTGGCTGCTGGTGGAGGGTATCTATCTTCACAACTTGCTGCTGGTCACCGTGTTCACTGAGAGGAACTACTTCAACATCTACCTGTGCATCGGCTGGGTCGCCCCGCTGCTGTTCGTGGTGCCCTGGGTGACGCTGAGGTACCTGTATGACAACACAGAGTGCTGGGAGCAGAACAACAACATCGGGATCTGGTGGGTCATCCGCTCCACCACTATGTTAGCCATCCTGATCAatttcttcatcttcatcaggATCATCCAGATCCTTGTGTCGAAGCTGCAATCGCATCAGATGAGATACACCGATTACAAGTTCAGgcTAGCTAAGTCCACTCTCACCCTGATCCCCCTGCTGGGGATGCACGAGGTGGTCTTCGCTTCGCTGACGGACGACTTCACCCAGGGCCCCATGCGCCTCGTCAAGCTCTTCTTTGACCTCTTCTTGAACTCCTTCCAGGGTCTGCTGGTAGCCATCCTGTACTGCTTTGTCAACGCAGAGgTACAGTCAGAGCTGCTGAAGAACTGGAAGCGCTGGAAGCTGGGGAAGGACATCGAGGAGGAGTACCGGCACACCTACAGCCAGACTCCGCATGGCAAGAACGGCAGCACCGCCAACTCTGCTGCAGACACAGCCGACTGCTCCGCCTCCGCTGCCATCACCGCCGGGGAGAAACACAAGCTGGTGAGCAGCTACCAGAACGGCACAGGCAAGACCAAGCACGTCCTGCAGCCCCCGGAGGCACCAGACAGGGGCACCAACTCGCTGGCGGAGGACATCAGGCTGGAGGACAAGGCGCGGTACTACGCGTTTCCACCAAAGACCTCCGAGAGCAACTTCTGACCGGGTTGGATGGCAGTTCAACCAATCGTGATACCTCGCTCTcgcctctctctctggctggcgcagtgcagtgtggtgcagtgcatgctggggcCTGGCAGCAGTGAGTGGCGCTGTTCTGATTAGCTGAGGCAGAGGGGCGTGTCCCCAAACGCGCGTCCTCTGGGTCTCAGTGATTTTAGACCATTGCCACGGCGCCGGGGCGTGTTTACAACTCACAAGCCCCCTCTGTGGCCACCTGGAGGTGAAACACTGCCTGCTGCGTCTGCTTCACTGTGCGGAGCCCGCGAGGAGGCACTGACTGCACCGGCTTTACTTCCTTTCACTCTTATCTTTccgtttttatttctttaatgtaacaagaaaaaagtcaacaaaaacaagaaaagactcACAGTAATGAGCTGCAAACTGCGGCAAAAACAAACCGACAAAAATAACTTGCTTCTAACATCAGTCATTGCAAAAATAGAGAACAGACAATGGaaaacatagacacacacacacactcacgcacacacacacacacaaacgaaaCAGGGTCTTAGATGTTGTTGCCAATGCTTCTTTAGGTGTCAAAATGAACAGCAGACTGATCACTCCTTCAGTGCGAGTGTCCAGTTAACACACAGCCCCATGGGACCAGGACACACATTCCTGACTGTCTCCTGCCATTCAGAGTGATGTCTGCATAGTGTCGCCAGTGCCGAGTTGTCTGTCGCCATAGGATTAGAAtcgttttgttatttttatttttgtttttgttttttgtgattgtTGTTGGACTCAAACCCCGAAAGAAGGGTGTAAAGAACGAAAGAGCGAAAGCACAACAAGACTCCATCTTCAGACTCTGGGGGGGGTCCTCTTGTCCTAGGAGGAGTCGCCACAAACGAACAGCCGCTGTTGGGGTCCCAGCCGGGCCACACGCCGCCCCCCGTCTGTCTGCCTGCTGTGGGAGAGAAGCTGAGCACTCGCTCTCTTGctcacagacacacgcacaagAACAATAATGGCTCGGTGGACTGCCGTGGAACTGGGGGGGGTGTCTGTGCTGATCACCTGATTAGGGTGGTGGTAGGTCCTGATTAAGTATCAAATTTCAATtcaaaacgttttatttttaaaaagattctCGCAAAGAAAGTGTGTGAACCAAAGTGGGTTGATTGTATCTGTGATgttctgttgctgttgctgttgctgttgctgttggtTTTTGAAATGACGATTGATGTCATGTGCTTTTTTACGGGGAGCTGTCAGCCAGTGCCTTCATCACACGAAGGGAGATGGACGAGTGGAcgcatgtgtatatatgtaaggACAGGGCACTCATTTCTgaacatatataaacatgtatacatacacatagagatatatatatatatttactggaGATCTTGGAtgctaaattaatgtaattgttttatcaattaggctttttttttatacagctgataaattaaatatactgcTGACTCAGACCTGATGCTATCCAGGCACGACTCCCTTCGCTTGCTTCTCAGACATTGGCTGCATCTGTGGCTGTGAGTCCAATGATGCCTGCTGGACATCCGTCCTATGCTGACCAGTTTCATCTGACGTggatagatatatacacacatttacaatattgAAATCTGGTCATGTGACATGTGTGTAGGTACCTGATATTAATATCGCCAGACTGAATATCAGCAGATTGTTTTTCGTCGCTGTTGTGGCCATATTGCATGAGCAGCTGTTTGGAAAGCTAACTGATACTGAGTCAATTACCTTTGCCTCATTGTGCTCCCTGACACCCCCAGCTCTCTAACACAGGACCGccacacagtcacagagagCCGGCTCTTTTACTCcatttgattttattccatCTTATTTTACGAGCAGAATGGGATTTCTCAGAGCTGAGGCCTGGGGGGGCGTCACGGAgagctcttttttttcttttttttaacaaacaaaaccagagTCTATGAATTTGTGAGCCTTTTtgcacaattttaatttatatatggTAAATGTGTAAATAGATGTATATGCAGTATAATATAAACTATGTTTTGGGGGGTGTGTTGCCCTTGCGACGCGCGGGCCGACGCGCCTCTTCACACGGGGGTCTTGCCTTGCAGGTAAACTGCGGACTGTGGCTCTGATGCAGTGTCGGAGCAACAGGTAGCGTTTGCAGTGTCGAGTGGCTTCAGAAAACCCAGCCGCTCACCGGCCAGTCGGCACCGGCTCTGGTGCCTCACCGCAGCGTGGGGCCGCTCTGAGGAGGGACTCCATGCAGCCAAGGAACTCGGCACTGTCCCTGGGGGTATCTTCTGGGGTACTACAGGGCtccaatgtgtatttatattgcatGTAGATGGATATTTGTGTTTGCTCTCTGAACGTCTCAAGAACGGTTGATAGCCTCTTCCATCGCTCCTGTCCAGCTCCTCTCAACTGAGCTCTCCATTACTTAATTGGATTCTTAATTGGATTCTTAATTGGCCACACAGTTATCACCACCCTTCAGCTGAAATGAGTCAGAAAAAGTTAACATGACTAGACAGTAAAGGACTGGTGAGGAGAATAATTTATGCAGCGCAGGTGTCACTGAGGCAGTTGACAGCTGGACTGGGAATCGAGCTGCGGTGGCGCAGGTGTCCTGGGCAGGACGCCCCAGTCCCTGTTTGTCCTCGGTGAGGAGAGAGTGCCCCGGGGGCCAGAGCAGCCTGGCAGCCATGCGTCAGTGTGGTCGGGGGTTTGGGAGTGCGGTTAGGAAGCCAGCTGTATCGTATGTATATGACATGAATACAGCAAGACCGATTATGAGATGATTATATTTTAGGTTCCTGTTGTGACCAGATGCATCAACAGCTGTTACAGAATTAACTGTTACAGAATAAATTACCTGAGCCTGTGatccaccaccccccccccaccagctaTCCAAAACAAGACAGCGATACAATGGTATTGCGGTGGCTGTAGGTGGAAGCTCCCAACTCGTCTCAGCCTGTGACAGCAGGGGTGGAGGGGCTACTGAGCTGAGTGGAAGCAGTCTCTCCCTTGAAATGCAGGAGGTAATAGAGGAGGAGCAGAGAGGGAGGACATAGTGATGTCAACATTGCAAAATTATGTTATCCAATTCATTTGGGccgttgttttttctttcactgaaGTAATCCAAACTGTCTCTGAATAGAACACCCTGAAACACGGGGCTCGGTCCACAAGCGTCTCTGTGACCCGGCATCCTGCGAGTCTCATGCTCAGCACCATTTAAAACtagtaaataaatcataaacgCATGCATTATTCAAAATGATACATGACACCCCCCCACCCGCACCATCCGAAAGTGCCGCCGAACGTCGGTCTGTGTTTCTGAAGCCGCTTGACGTCCTAGAACCGACCCTGGCGCCGTTACAGCCCGTCTGAATGTATTCTGTGTAATTCTGATGAAGacttttagttttcttgtatttttctgatgtgccattctctctctgattgtgattattttagttaaaatgttttatcatcATTAATATTGCTATTGATGTAATTCGTTTGTTTTGTCTGAAGAGCGAAGTTCAGCAACAAGgccttgttctctctctctctctccctttccccccCAGTCAGAGGGTGAGCAGGGGACTGCTGTAGAGCGGTGTCTGGGTAAATACTGAATTTCCTCTTCCTGTTTCCCTGGGGGGGACATGTAAAACGCTGCGTGTCTGTTATCATGATCACACAtagtggggggatggggggacaAACATATGGACAGCATCATTCCGCACTCTCTCATCAGGACCTCCTGTCTGTACAAACATGCgctgtttgtgttctgtttgcaatgaaagaaatttaaattaaaattaaagaagtTTAAGAGACA

Function

GO: NA

KEGG:

id description
K04583 GCGR; glucagon receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013421 True 5497 mRNA 0.50 13 30623976 30635826

Neighbor

gene id symbol gene type direction distance location
AMCG00013420 NA coding downstream 90097 30523907 ~ 30533879 (-)
AMCG00013419 NA coding downstream 102305 30507951 ~ 30521671 (-)
AMCG00013410 NA coding downstream 187235 30430664 ~ 30436741 (-)
AMCG00013403 NA coding downstream 283515 30333448 ~ 30340461 (-)
AMCG00013404 NA coding downstream 291276 30322265 ~ 30332700 (-)
AMCG00013430 LOC104954087 coding upstream 57249 30693075 ~ 30697703 (-)
AMCG00013432 NA coding upstream 62414 30698240 ~ 30700665 (-)
AMCG00013427 mrpl12,LOC106606250 coding upstream 66940 30702766 ~ 30705013 (-)
AMCG00013426 hgs coding upstream 75683 30711509 ~ 30723530 (-)
AMCG00013428 NA coding upstream 113957 30749783 ~ 30760059 (-)
G44259 p4hb,LOC107591928 non-coding downstream 24925 30553781 ~ 30599051 (-)
G44256 arhgdia,LOC107665665,LOC107654583 non-coding downstream 61285 30540313 ~ 30562691 (-)
G44264 NA non-coding downstream 71926 30551389 ~ 30552050 (-)
G44261 NA non-coding downstream 84659 30533971 ~ 30539317 (-)
G44213 NA non-coding downstream 168370 30384686 ~ 30455606 (-)
G44330 NA non-coding upstream 136716 30772542 ~ 30774110 (-)
G44381 NA non-coding upstream 289660 30925486 ~ 30931267 (-)
G44382 NA non-coding upstream 295934 30931760 ~ 30935200 (-)
G44384 NA non-coding upstream 301799 30937625 ~ 30937857 (-)
G44420 NA non-coding upstream 410899 31046725 ~ 31047119 (-)
AMCG00013411 anapc11,LOC107553313,LOC106564932 other downstream 137645 30483305 ~ 30486331 (-)
AMCG00013412 NA other downstream 141650 30468630 ~ 30482326 (-)
AMCG00013409 LOC107590438 other downstream 159885 30455727 ~ 30464091 (-)
G44243 NA other downstream 200951 30399887 ~ 30423025 (-)
AMCG00013405 NA other downstream 333109 30286642 ~ 30290867 (-)
AMCG00013425 NA other upstream 94461 30730287 ~ 30742643 (-)
G44719 NA other upstream 1929934 32565760 ~ 32567952 (-)
AMCG00013488 NA other upstream 1986327 32622153 ~ 32627904 (-)
AMCG00013518 NA other upstream 2833023 33468849 ~ 33501747 (-)
G45037 NA other upstream 3042398 33678224 ~ 33678907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location