RNA id: AMCG00013421


Basic Information

Item Value
RNA id AMCG00013421
length 5497
RNA type mRNA
GC content 0.50
exon number 13
gene id AMCG00013421
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30623976 ~ 30635826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGACGCCCCCCTATGAggtgacccccccaccccacacccaGCATCGTTGGCAGCAGGACTAAGGGATGTCACAGCTCTTCCTCCTCCTAACTCTGCTTTTACTCCAGATCAACACCCAGGTCCTGTCAGCTCAAATTCTGAGGAACTTGATTGACGGCTGGGAAAGCTACAAGGAAGAGTGCCACCACAACAACACCATCGAGCCTCCCGCGACTGGTCTAGTGTGTAATCGTACCTTGGACCGGTTCGCCTGCTGGCCAGATGGGCAGCCCAACACCGTGGTGAACGTGTCCTGCCCCTGGTATCTGCCATGGCACTCACAAGtcaAGCATGGCCATGTGTTCCGGGAGTGTGGAGCGGACGGCCAATGGCTGCCCTCGAAGAACATGAGCGAGTGCACCCAGGGCGAGTACGACGAGATGTATGGGAAGATTCTGAACGGCTTCCGAGTGATGTACACGGTGGGCTACTCTCTGTCCCTGGCCGCTCTGGTGTTGGCTCTGGGCATCCTGTTGGCGTTCAGGAAGCTGCACTGCATGAGGAACTACATCCACATCAACCTGTTTGCCTCCTTCATCCTGCGCGCGCTGTCCATACTGGTGAAGGATGAGCTGCTGTACATGCCCCCCATGAACATCAGTCAGCACGAGGATGAGCTGGAGGTCTGGATCAACAACAGCAAGACTCAGTCTCAGATGGGCTGCCGGACCGCCCTGGTGATGATGCAATACAGCATCGTGGCCAATTACAACTGGCTGCTGGTGGAGGGTATCTATCTTCACAACTTGCTGCTGGTCACCGTGTTCACTGAGAGGAACTACTTCAACATCTACCTGTGCATCGGCTGGGTCGCCCCGCTGCTGTTCGTGGTGCCCTGGGTGACGCTGAGGTACCTGTATGACAACACAGAGTGCTGGGAGCAGAACAACAACATCGGGATCTGGTGGGTCATCCGCTCCACCACTATGTTAGCCATCCTGATCAatttcttcatcttcatcaggATCATCCAGATCCTTGTGTCGAAGCTGCAATCGCATCAGATGAGATACACCGATTACAAGTTCAGgcTAGCTAAGTCCACTCTCACCCTGATCCCCCTGCTGGGGATGCACGAGGTGGTCTTCGCTTCGCTGACGGACGACTTCACCCAGGGCCCCATGCGCCTCGTCAAGCTCTTCTTTGACCTCTTCTTGAACTCCTTCCAGGGTCTGCTGGTAGCCATCCTGTACTGCTTTGTCAACGCAGAGgTACAGTCAGAGCTGCTGAAGAACTGGAAGCGCTGGAAGCTGGGGAAGGACATCGAGGAGGAGTACCGGCACACCTACAGCCAGACTCCGCATGGCAAGAACGGCAGCACCGCCAACTCTGCTGCAGACACAGCCGACTGCTCCGCCTCCGCTGCCATCACCGCCGGGGAGAAACACAAGCTGGTGAGCAGCTACCAGAACGGCACAGGCAAGACCAAGCACGTCCTGCAGCCCCCGGAGGCACCAGACAGGGGCACCAACTCGCTGGCGGAGGACATCAGGCTGGAGGACAAGGCGCGGTACTACGCGTTTCCACCAAAGACCTCCGAGAGCAACTTCTGACCGGGTTGGATGGCAGTTCAACCAATCGTGATACCTCGCTCTcgcctctctctctggctggcgcagtgcagtgtggtgcagtgcatgctggggcCTGGCAGCAGTGAGTGGCGCTGTTCTGATTAGCTGAGGCAGAGGGGCGTGTCCCCAAACGCGCGTCCTCTGGGTCTCAGTGATTTTAGACCATTGCCACGGCGCCGGGGCGTGTTTACAACTCACAAGCCCCCTCTGTGGCCACCTGGAGGTGAAACACTGCCTGCTGCGTCTGCTTCACTGTGCGGAGCCCGCGAGGAGGCACTGACTGCACCGGCTTTACTTCCTTTCACTCTTATCTTTccgtttttatttctttaatgtaacaagaaaaaagtcaacaaaaacaagaaaagactcACAGTAATGAGCTGCAAACTGCGGCAAAAACAAACCGACAAAAATAACTTGCTTCTAACATCAGTCATTGCAAAAATAGAGAACAGACAATGGaaaacatagacacacacacacactcacgcacacacacacacacaaacgaaaCAGGGTCTTAGATGTTGTTGCCAATGCTTCTTTAGGTGTCAAAATGAACAGCAGACTGATCACTCCTTCAGTGCGAGTGTCCAGTTAACACACAGCCCCATGGGACCAGGACACACATTCCTGACTGTCTCCTGCCATTCAGAGTGATGTCTGCATAGTGTCGCCAGTGCCGAGTTGTCTGTCGCCATAGGATTAGAAtcgttttgttatttttatttttgtttttgttttttgtgattgtTGTTGGACTCAAACCCCGAAAGAAGGGTGTAAAGAACGAAAGAGCGAAAGCACAACAAGACTCCATCTTCAGACTCTGGGGGGGGTCCTCTTGTCCTAGGAGGAGTCGCCACAAACGAACAGCCGCTGTTGGGGTCCCAGCCGGGCCACACGCCGCCCCCCGTCTGTCTGCCTGCTGTGGGAGAGAAGCTGAGCACTCGCTCTCTTGctcacagacacacgcacaagAACAATAATGGCTCGGTGGACTGCCGTGGAACTGGGGGGGGTGTCTGTGCTGATCACCTGATTAGGGTGGTGGTAGGTCCTGATTAAGTATCAAATTTCAATtcaaaacgttttatttttaaaaagattctCGCAAAGAAAGTGTGTGAACCAAAGTGGGTTGATTGTATCTGTGATgttctgttgctgttgctgttgctgttgctgttggtTTTTGAAATGACGATTGATGTCATGTGCTTTTTTACGGGGAGCTGTCAGCCAGTGCCTTCATCACACGAAGGGAGATGGACGAGTGGAcgcatgtgtatatatgtaaggACAGGGCACTCATTTCTgaacatatataaacatgtatacatacacatagagatatatatatatatttactggaGATCTTGGAtgctaaattaatgtaattgttttatcaattaggctttttttttatacagctgataaattaaatatactgcTGACTCAGACCTGATGCTATCCAGGCACGACTCCCTTCGCTTGCTTCTCAGACATTGGCTGCATCTGTGGCTGTGAGTCCAATGATGCCTGCTGGACATCCGTCCTATGCTGACCAGTTTCATCTGACGTggatagatatatacacacatttacaatattgAAATCTGGTCATGTGACATGTGTGTAGGTACCTGATATTAATATCGCCAGACTGAATATCAGCAGATTGTTTTTCGTCGCTGTTGTGGCCATATTGCATGAGCAGCTGTTTGGAAAGCTAACTGATACTGAGTCAATTACCTTTGCCTCATTGTGCTCCCTGACACCCCCAGCTCTCTAACACAGGACCGccacacagtcacagagagCCGGCTCTTTTACTCcatttgattttattccatCTTATTTTACGAGCAGAATGGGATTTCTCAGAGCTGAGGCCTGGGGGGGCGTCACGGAgagctcttttttttcttttttttaacaaacaaaaccagagTCTATGAATTTGTGAGCCTTTTtgcacaattttaatttatatatggTAAATGTGTAAATAGATGTATATGCAGTATAATATAAACTATGTTTTGGGGGGTGTGTTGCCCTTGCGACGCGCGGGCCGACGCGCCTCTTCACACGGGGGTCTTGCCTTGCAGGTAAACTGCGGACTGTGGCTCTGATGCAGTGTCGGAGCAACAGGTAGCGTTTGCAGTGTCGAGTGGCTTCAGAAAACCCAGCCGCTCACCGGCCAGTCGGCACCGGCTCTGGTGCCTCACCGCAGCGTGGGGCCGCTCTGAGGAGGGACTCCATGCAGCCAAGGAACTCGGCACTGTCCCTGGGGGTATCTTCTGGGGTACTACAGGGCtccaatgtgtatttatattgcatGTAGATGGATATTTGTGTTTGCTCTCTGAACGTCTCAAGAACGGTTGATAGCCTCTTCCATCGCTCCTGTCCAGCTCCTCTCAACTGAGCTCTCCATTACTTAATTGGATTCTTAATTGGATTCTTAATTGGCCACACAGTTATCACCACCCTTCAGCTGAAATGAGTCAGAAAAAGTTAACATGACTAGACAGTAAAGGACTGGTGAGGAGAATAATTTATGCAGCGCAGGTGTCACTGAGGCAGTTGACAGCTGGACTGGGAATCGAGCTGCGGTGGCGCAGGTGTCCTGGGCAGGACGCCCCAGTCCCTGTTTGTCCTCGGTGAGGAGAGAGTGCCCCGGGGGCCAGAGCAGCCTGGCAGCCATGCGTCAGTGTGGTCGGGGGTTTGGGAGTGCGGTTAGGAAGCCAGCTGTATCGTATGTATATGACATGAATACAGCAAGACCGATTATGAGATGATTATATTTTAGGTTCCTGTTGTGACCAGATGCATCAACAGCTGTTACAGAATTAACTGTTACAGAATAAATTACCTGAGCCTGTGatccaccaccccccccccaccagctaTCCAAAACAAGACAGCGATACAATGGTATTGCGGTGGCTGTAGGTGGAAGCTCCCAACTCGTCTCAGCCTGTGACAGCAGGGGTGGAGGGGCTACTGAGCTGAGTGGAAGCAGTCTCTCCCTTGAAATGCAGGAGGTAATAGAGGAGGAGCAGAGAGGGAGGACATAGTGATGTCAACATTGCAAAATTATGTTATCCAATTCATTTGGGccgttgttttttctttcactgaaGTAATCCAAACTGTCTCTGAATAGAACACCCTGAAACACGGGGCTCGGTCCACAAGCGTCTCTGTGACCCGGCATCCTGCGAGTCTCATGCTCAGCACCATTTAAAACtagtaaataaatcataaacgCATGCATTATTCAAAATGATACATGACACCCCCCCACCCGCACCATCCGAAAGTGCCGCCGAACGTCGGTCTGTGTTTCTGAAGCCGCTTGACGTCCTAGAACCGACCCTGGCGCCGTTACAGCCCGTCTGAATGTATTCTGTGTAATTCTGATGAAGacttttagttttcttgtatttttctgatgtgccattctctctctgattgtgattattttagttaaaatgttttatcatcATTAATATTGCTATTGATGTAATTCGTTTGTTTTGTCTGAAGAGCGAAGTTCAGCAACAAGgccttgttctctctctctctctccctttccccccCAGTCAGAGGGTGAGCAGGGGACTGCTGTAGAGCGGTGTCTGGGTAAATACTGAATTTCCTCTTCCTGTTTCCCTGGGGGGGACATGTAAAACGCTGCGTGTCTGTTATCATGATCACACAtagtggggggatggggggacaAACATATGGACAGCATCATTCCGCACTCTCTCATCAGGACCTCCTGTCTGTACAAACATGCgctgtttgtgttctgtttgcaatgaaagaaatttaaattaaaattaaagaagtTTAAGAGACA

Function

GO: NA

KEGG:

id description
K04583 GCGR; glucagon receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55183 lncRNA downstream 24925 30553781 ~ 30599051 (-) True G44259
TU55180 lncRNA downstream 61285 30540668 ~ 30562691 (-) False G44256
TU55184 lncRNA downstream 66728 30554754 ~ 30557248 (-) False G44259
TU55192 lncRNA downstream 71926 30551389 ~ 30552050 (-) True G44264
TU55177 lncRNA downstream 81118 30540313 ~ 30542858 (-) True G44256
TU55246 lncRNA upstream 94552 30730378 ~ 30731433 (-) False AMCG00013425
TU55270 lncRNA upstream 136716 30772542 ~ 30774110 (-) True G44330
TU55331 lncRNA upstream 289660 30925486 ~ 30931267 (-) True G44381
TU55332 lncRNA upstream 295934 30931760 ~ 30935200 (-) True G44382
TU55334 lncRNA upstream 301799 30937625 ~ 30937857 (-) True G44384
AMCG00013420 mRNA downstream 90097 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013419 mRNA downstream 102305 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013411 mRNA downstream 137660 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013412 mRNA downstream 141650 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013409 mRNA downstream 159885 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013430 mRNA upstream 57249 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013432 mRNA upstream 62414 30698240 ~ 30700665 (-) True AMCG00013432
AMCG00013427 mRNA upstream 66940 30702766 ~ 30705013 (-) True AMCG00013427
AMCG00013426 mRNA upstream 75683 30711509 ~ 30723530 (-) True AMCG00013426
AMCG00013425 mRNA upstream 94461 30730287 ~ 30742643 (-) True AMCG00013425
TU55168 other downstream 137645 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 137645 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 137645 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 137645 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 145782 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 1929934 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 1986355 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 3042398 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 3057018 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6323351 36959177 ~ 36959914 (-) True G45468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052081 False 4650 mRNA 0.44 14 NC_007114.7 49757578 ~ 49925313 (-)