AMCG00013596


Basic Information

Item Value
gene id AMCG00013596
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 37292939 ~ 37312946 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013596
ATGGCAGCCAACAGGGTCGGGAGGCGAAACAACCACAAAGTCCACTCCCCGAACAGGGGTCCCAGGGAGGCCGGGCTCAACATACAGAAGAGGCAAGCCCGGGTGACGGTGAAGTACAACCGAAAGGAGCTCCAGAAACGCTTGGATGTGGAGAAATGGATCGACGAGAGGCTGGACGAGCTGTACCTGGGCAGGGAGGCTGAGATGCCAGAGGAGGTGAACATCGATGACCTGTTGGACCTGCCCAGCGATGAGGAGAGAGTCGGCAAGCTCCGGGTCTTCATCAAGGACCTGATTGTGAAGCTGCATGGACTACAGAAGCAAGAAGATTTGCAAAATGATGGCATTGAGCATTCACACTGAGGTTTACAGGATAGAAGTGGATGGGGGGGATGCTAAACAGCTGCTCCCAAAACTGACCCATAAACCAGAAGAAATTGGACAAAGAAATGCTCACATACATGAACacctacacacactcactcacagtcacacttgcacactcacacacttacCCAGTCAGTCCCACACATGCGTGTGTGCGCCAAAACACAAACTTTACTAAAGGAAGCAACCCTAACCACACTTAACCGGTTacttgtatatatatctatttccCACAACGGGCTTTCAGCAGTATGAAGCATAACCGATAAGAAGTGGTGCTGTCACAGAAGCGAAATCTACCCATCCTGTCTTTCCATGCTAAGAGGCACAAATGGAGAAGGGGGGGGTTATCTATAACACCTGCTGTTTCCTCTCTATACCACGTTGGACTTGTTTCACATCCTGTAGTTCATTGATTGTCCTTTGTTTAAATGCTACTGTAATTTCAGTGCTTTCATTAAAAAGCTAATCTGTTTCCCTTATTAGTGCTTTACCAGCCCTACATAGATCATTGGTCTGCCTGTTCCTGAACAGCTCCAGTCCTACGTTTCAAAGGTATCTTCAAATCAGTGGCAAATTATCACATTAATTCAGAGTTACACCGACAACTGGTCAGTACTCGGTACCTCATAACGGTGAGAACCTCATCAAGTCATTCCTCGAAGGGTCACCATCTGATTGCCTTGTTCCACACACTCATAAGCTGGCATCCTATCATTAGTCATAGGATATGAAACAAGTCAGACTTAAGAAGTGAACCACAATACTTTCTAAAACTGGTCTTCATTCTGGGATGGAGGGGTTGGGGGTACCACATGGTGTTCTGTGTTTGAAGCAATATGTTTTTACACCACCGTGGAAGATTGTGAAATGGGAAACAGGTCTCCAGCCTTAAACACTTATTGGGCATACTTGCTTGTAAATCGGTCACCAAGTCTCATTCTGGTACTCCATTGAACTAACACCAAAGTCATCAGTAAGGTTTTCATGTGTAAATATGACAGAGACAAAGAACATTGTGCATGTTGTTATAAAGTACCAGTCTCACATGAGTGGGTTTGTAAAACGCTGGCTTCTCCATGTTTCGTATTGTTAAGGGATTCAACTAGAGGTCCCACCACCCCTTATTAAAGTTGTATCTGTTTCATAGTGTATCTGCCATTCCACTACACAAACAGTTTTTATATAACTCATCGCTTTATTTCAGGATTGTTTTATACTGAGATTTTCCTACTGATTGTTttgatataatttgtaaatctgtatttgttgtcttgattttttttttttggtttggttttgtacATTCTTTGAAATAAAGATTTACTACTGCAGTACTCGTCTGTCACTCTgaggtaaaatgtatttaacggGTTGTTTGTATTGCTTGGGTTTGGCAGGAAAACaggatttaattttacaaatgaatGACATTAGTAGATTACTTGCTGCATTTTGAGAGCAAACAACAAGCTATACCCCAACCTTAGCCAACAATTTTAATTTCGAGCTAGGCCCTTACATATCTACACAGGCATCAGTAATATCAAtagaaaagcaaccctaaccTTTGTGAAAGGCTAAGTTACTGGGGACTGTAACCTTTACCCTAACCCAGACAACATGTTTCcctaattttaatataatacttCACTTAAATGCAAACGTTTGCTAAGTTACATTGCTCAGgtgtacatattaaaaatatgaaatatagcCTATATGGTGTAGTTCCTATTCAACAAACATTAATTAAGGAATAGACCTAGGACTTGAAATGAAATTATTGATATAACTGGCATGTACATTAATAAACTATCTGTCTGACATAATCTTACTGGAACAGTAAGTTAGCCTAGTTGGCTAGTAGGGATGTTAAATTTGGTTAAatttagtaaatgtttaaacattaaaaataagaatttaatCTCTGTCATGCAATAGACTGGCACATTGTGGCAGGAAAGTGAAAGGGGCTACTGCTGCACAATATTTTTGGTTAAATACACGTCATGCTGGTTCACTTCATAATTGGAGGATCATAAACACAAGCTCCTGACTTGAAAAACCTGTTCACGTCAGCTTTTGAGTCGTAAATACTACTCGTGAACTCAGACTTAGGAGAGAATGTAACTTgttgtaatttgcatttaattccCAGACTGCACAACTGCCAACATTTAAGAAGTTATCATGCAAAACTTAATATCTTAAAGATAGGCTTTAGGACAATATAGTCTAAAAATAAACTCCCCAATTGTTGTCTTCAATAACAATAGGAAACCAACATTCCCCCCTTACTCTGAAAGTCAAACCATGAATTATAATGCATGGACTTGGCCCTACCTTCAGTTATTCAGCTCTGGCTTCTCTTCAGCTTAAATCTGTATCAGTATAAATCTttcgtttgtttatttgaagttaagt

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12328 PPP1R14A, CPI17; protein phosphatase 1 regulatory subunit 14A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013596 True 2814 mRNA 0.40 3 37292939 37312946

Neighbor

gene id symbol gene type direction distance location
AMCG00013597 NA coding downstream 15188 37251216 ~ 37277751 (-)
AMCG00013594 LOC107601731,LOC107690446,LOC107743699 coding downstream 79341 37200451 ~ 37213598 (-)
AMCG00013592 NA coding downstream 101304 37175701 ~ 37191635 (-)
AMCG00013590 klc3,LOC108425834,LOC106580868 coding downstream 141078 37139369 ~ 37151861 (-)
AMCG00013591 LOC106612685,LOC101475786,LOC103372140 coding downstream 197486 37079241 ~ 37095453 (-)
AMCG00013607 LOC107683438,LOC107592930,LOC107672095,LOC106580762,LOC107757416 coding upstream 371663 37684609 ~ 37687237 (-)
AMCG00013611 NA coding upstream 403513 37716459 ~ 37735391 (-)
AMCG00013610 zc3h4,LOC106580865,LOC106612521 coding upstream 439777 37752723 ~ 37758389 (-)
AMCG00013617 NA coding upstream 468647 37781593 ~ 37791151 (-)
AMCG00013621 NA coding upstream 563369 37876315 ~ 37891990 (-)
G45513 NA non-coding downstream 186316 37101887 ~ 37106623 (-)
G45509 NA non-coding downstream 206079 37086586 ~ 37086860 (-)
G45437 NA non-coding downstream 422254 36867304 ~ 36870685 (-)
G45410 NA non-coding downstream 556411 36732988 ~ 36736528 (-)
G45409 NA non-coding downstream 562989 36727916 ~ 36729950 (-)
G45583 NA non-coding upstream 12413 37325359 ~ 37327756 (-)
G45599 NA non-coding upstream 77712 37390658 ~ 37393857 (-)
G45611 NA non-coding upstream 146591 37459537 ~ 37461946 (-)
G45616 NA non-coding upstream 203213 37516159 ~ 37519003 (-)
G45654 NA non-coding upstream 368461 37681407 ~ 37681619 (-)
G45571 NA other downstream 69115 37130858 ~ 37223824 (-)
G45468 NA other downstream 333025 36959177 ~ 36959914 (-)
AMCG00013578 NA other downstream 407446 36879193 ~ 36885493 (-)
AMCG00013531 NA other downstream 3593227 33692844 ~ 33699712 (-)
G45037 NA other downstream 3614032 33678224 ~ 33678907 (-)
G45614 supt5h other upstream 169970 37482916 ~ 37483608 (-)
G45617 LOC100846954 other upstream 175783 37488729 ~ 37538310 (-)
AMCG00013608 NA other upstream 351009 37663955 ~ 37670395 (-)
G45764 NA other upstream 697152 38010098 ~ 38012216 (-)
G45790 NA other upstream 722364 38035310 ~ 38035667 (-)

Expression


Co-expression Network