AMCG00013662


Basic Information

Item Value
gene id AMCG00013662
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38580510 ~ 38585732 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013662
ATGGCGGCGGTGCTGAGGGAGACGGCGAGCCTGTACGAGACGCTGAAAAGCGAGTGGAACAAGAAGAGCCCGAGCTTAAACAAGTGCGGAGACATCCTGGCCAAACTCAAGATCTCTCTGTTGGAGTTGAACTTCCTGCCCACCTCCGGGACCAAGCTCACCAAACAGCAGCTCATTTTAGCACgtgATGTGTTGGAGATTGGGGCCCAGTGGAGTATCCTGAAGAAGGACATCCCCTCCTTCGAGAGATACATGGCTCAGCTCAAggAGCAGTTGCCAGAGTCTGCTTATATGCACCAGTTGTTGGGTCTGAACCTGCTGTTCCTGCTGTCTCAGAACCGTGTGTCGGACTTCCACACTGAGCTGGAGCGCCTGAGCGCCCGCGACATCCAGACCAATGTGTTTCTGGCAAAAGGAAACATCCCAGCAGAGAGCTACACCTTCTTCATTGACATCCTGCTGGACACtatcagGGATGAAATTGCGGGCTGTATAGAGAAGGCCTATGAGCAGATCCTGTTCAGCGAGGCGACGCGAGTACTGTTCTTCTCCTCCCCCAAGAAGATGACCGATTATGCCAAGAAGcgggGCTGGTCTCAGGGTGTGGGGGGATATTACTCCTTCAGCTGCCGGCAGCAGCGCCTGGAGGAGCAGCCCATCCCCTCCACTCAGCTGGCCCAACAGCCCTTCTCTGACTGCCATGGAGGCGGCCAGTTTGATCGTGGTGACCCAAGCTGGCTCACACAGGATGTTGTGCCTCACAGACaacctgagagacagaga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005838 proteasome regulatory particle cellular_component

KEGG:

id description
K03031 PSMD8, RPN12; 26S proteasome regulatory subunit N12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013662 True 783 mRNA 0.56 8 38580510 38585732

Neighbor

gene id symbol gene type direction distance location
AMCG00013659 NA coding downstream 6382 38569452 ~ 38574128 (-)
AMCG00013660 sympk,LOC104962469,LOC107595511,LOC107712124 coding downstream 44288 38524755 ~ 38536222 (-)
AMCG00013657 NA coding downstream 59488 38515036 ~ 38521022 (-)
AMCG00013658 NA coding downstream 77679 38495950 ~ 38502831 (-)
AMCG00013652 bckdha coding downstream 104347 38472336 ~ 38476163 (-)
AMCG00013667 NA coding upstream 6555 38592287 ~ 38597883 (-)
AMCG00013670 NA coding upstream 22357 38608089 ~ 38619473 (-)
AMCG00013666 NA coding upstream 44462 38630194 ~ 38639923 (-)
AMCG00013668 NA coding upstream 55310 38641042 ~ 38646192 (-)
AMCG00013675 LOC106612618,LOC106580837,LOC105026880,LOC102789735,LOC100701743 coding upstream 156123 38741855 ~ 38744967 (-)
G46003 NA non-coding downstream 29363 38502342 ~ 38551147 (-)
G46011 NA non-coding downstream 37168 38541276 ~ 38543342 (-)
G45971 NA non-coding downstream 121711 38457256 ~ 38458799 (-)
G45933 NA non-coding downstream 181512 38397935 ~ 38398998 (-)
G45930 NA non-coding downstream 223115 38355674 ~ 38357395 (-)
G46114 NA non-coding upstream 181694 38767426 ~ 38768235 (-)
G46134 NA non-coding upstream 240772 38826504 ~ 38830732 (-)
G46144 NA non-coding upstream 359081 38944813 ~ 38945061 (-)
G46175 NA non-coding upstream 588823 39174555 ~ 39177975 (-)
G46236 NA non-coding upstream 832759 39418491 ~ 39418739 (-)
AMCG00013663 b9d2 other downstream 34475 38543850 ~ 38546035 (-)
AMCG00013661 tmem91,LOC107676753,LOC107757682,LOC107662142,LOC107758240 other downstream 96241 38478552 ~ 38484269 (-)
AMCG00013650 NA other downstream 129163 38445846 ~ 38451347 (-)
AMCG00013641 NA other downstream 165307 38353850 ~ 38415203 (-)
G45917 NA other downstream 330919 38244821 ~ 38249591 (-)
AMCG00013669 NA other upstream 3247 38588979 ~ 38591202 (-)
AMCG00013677 h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107572204,LOC105896821,LOC107388308 other upstream 111663 38697395 ~ 38701074 (-)
AMCG00013685 NA other upstream 196292 38782024 ~ 38783433 (-)
AMCG00013691 NA other upstream 357043 38942775 ~ 38971579 (-)
G46333 NA other upstream 1687659 40273391 ~ 40275098 (-)

Expression


Co-expression Network