RNA id: AMCG00013662


Basic Information

Item Value
RNA id AMCG00013662
length 783
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00013662
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38580510 ~ 38585732 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGGTGCTGAGGGAGACGGCGAGCCTGTACGAGACGCTGAAAAGCGAGTGGAACAAGAAGAGCCCGAGCTTAAACAAGTGCGGAGACATCCTGGCCAAACTCAAGATCTCTCTGTTGGAGTTGAACTTCCTGCCCACCTCCGGGACCAAGCTCACCAAACAGCAGCTCATTTTAGCACgtgATGTGTTGGAGATTGGGGCCCAGTGGAGTATCCTGAAGAAGGACATCCCCTCCTTCGAGAGATACATGGCTCAGCTCAAggAGCAGTTGCCAGAGTCTGCTTATATGCACCAGTTGTTGGGTCTGAACCTGCTGTTCCTGCTGTCTCAGAACCGTGTGTCGGACTTCCACACTGAGCTGGAGCGCCTGAGCGCCCGCGACATCCAGACCAATGTGTTTCTGGCAAAAGGAAACATCCCAGCAGAGAGCTACACCTTCTTCATTGACATCCTGCTGGACACtatcagGGATGAAATTGCGGGCTGTATAGAGAAGGCCTATGAGCAGATCCTGTTCAGCGAGGCGACGCGAGTACTGTTCTTCTCCTCCCCCAAGAAGATGACCGATTATGCCAAGAAGcgggGCTGGTCTCAGGGTGTGGGGGGATATTACTCCTTCAGCTGCCGGCAGCAGCGCCTGGAGGAGCAGCCCATCCCCTCCACTCAGCTGGCCCAACAGCCCTTCTCTGACTGCCATGGAGGCGGCCAGTTTGATCGTGGTGACCCAAGCTGGCTCACACAGGATGTTGTGCCTCACAGACaacctgagagacagaga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005838 proteasome regulatory particle cellular_component

KEGG:

id description
K03031 PSMD8, RPN12; 26S proteasome regulatory subunit N12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57343 lncRNA downstream 29363 38502342 ~ 38551147 (-) True G46003
TU57351 lncRNA downstream 35651 38543850 ~ 38544859 (-) True AMCG00013663
TU57352 lncRNA downstream 37168 38541276 ~ 38543342 (-) True G46011
TU57290 lncRNA downstream 121711 38457256 ~ 38458799 (-) True G45971
TU57229 lncRNA downstream 165307 38353906 ~ 38415203 (-) False AMCG00013641
TU57429 lncRNA upstream 3247 38588979 ~ 38590897 (-) False AMCG00013669
TU57489 lncRNA upstream 181694 38767426 ~ 38768235 (-) True G46114
TU57517 lncRNA upstream 240772 38826504 ~ 38830732 (-) True G46134
TU57528 lncRNA upstream 359081 38944813 ~ 38945061 (-) True G46144
TU57533 lncRNA upstream 373822 38959554 ~ 38971579 (-) True AMCG00013691
AMCG00013659 mRNA downstream 6382 38569452 ~ 38574128 (-) True AMCG00013659
AMCG00013663 mRNA downstream 34475 38544211 ~ 38546035 (-) False AMCG00013663
AMCG00013660 mRNA downstream 44288 38524755 ~ 38536222 (-) True AMCG00013660
AMCG00013657 mRNA downstream 59488 38515036 ~ 38521022 (-) True AMCG00013657
AMCG00013658 mRNA downstream 77679 38495950 ~ 38502831 (-) True AMCG00013658
AMCG00013669 mRNA upstream 3247 38588979 ~ 38591202 (-) True AMCG00013669
AMCG00013667 mRNA upstream 6555 38592287 ~ 38597883 (-) True AMCG00013667
AMCG00013670 mRNA upstream 22357 38608089 ~ 38619473 (-) True AMCG00013670
AMCG00013666 mRNA upstream 44462 38630194 ~ 38639923 (-) True AMCG00013666
AMCG00013668 mRNA upstream 55310 38641042 ~ 38646192 (-) True AMCG00013668
TU57301 other downstream 96754 38478552 ~ 38483756 (-) False AMCG00013661
TU57307 other downstream 96754 38478552 ~ 38483756 (-) True AMCG00013661
TU57286 other downstream 129163 38448267 ~ 38451347 (-) False AMCG00013650
TU57222 other downstream 330919 38244821 ~ 38249591 (-) True G45917
TU57209 other downstream 349219 38193034 ~ 38231291 (-) True G45906
TU57455 other upstream 111663 38697395 ~ 38701074 (-) True AMCG00013677
TU57492 other upstream 196361 38782093 ~ 38783149 (-) False AMCG00013685
TU57766 other upstream 1687659 40273391 ~ 40275098 (-) True G46333
TU57809 other upstream 1800329 40386061 ~ 40428625 (-) True AMCG00013730
TU57869 other upstream 2001084 40586816 ~ 40587392 (-) True G46418

Expression Profile