RNA id: TU57209


Basic Information

Item Value
RNA id TU57209
length 1437
RNA type TUCP
GC content 0.48
exon number 2
gene id G45906
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38193034 ~ 38231291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtccataaatgtattaaaatattaaattattatatttaactaaCAGGTTTTGATTAGGGGGGCAGGTGTTgctaaggcactatataaacgagggtttctcccatctcagtgCAGCCCTCTCCTCACAGTGTGTGTGGGAATAGGAGGGAGAGGTTGGCTACTGTGTGGGGGATTTTCATTGGCTGTCCCTCTGTGCCTCTTgtgaagacagagagagagattgaaaggGCTGAGGGAATACAGACAGATGAGAGACTGGTATTTCCAGGAGGTCTCCCATCCAAGTACTGACCAGGCCCTGCCCTGTTTAGCTTCCGAGATCTAAACAGGATGCATTCAGGACGGTGTGGCCGCAAGATGGAAGACTGGTGGATGAGGGGTGGAGTGTCGGGGTCAGTAGTGGATGTAGGAGATCTGTACATCTTCCTCGATCTGCAGAGTGTCCACCAGTGTGAAGGGCTGCAGCCGGTGGGTGAATTCACAGAAACGCTGACCATTCACAAACACCTTGTAGCACCAGTTACCACAGCGTACCgagatctgagagagagagagcaaagtaTAATTCAACCAATAGCTTTATATGGCAGTGAAGTGTGGGGACCAATCACCAACCAGGAGTTCAAAAATTGGGACAAACACCCCACAGACACCTGCATGCAGAgttctgtaaaaatatattgaaagtacagagaaatacaCCAAACAATGCACGCAGGGCTGAATTAGGCCTTTATCCATTGGTCATTATTCAAAAAAGTGCACTGAAATATTGGATTCACCTAAAAAATAGCGTATCTAACTCACTCCATTTCAAAGCCTTGCAAAACCAGGAGCTCAGCCCAGAGAAGAGTCCCCTCAGCCAGCTGGTCCTGAGGCTCTCTGAGCAGAGCGATGCTGCGCTCAGTCAGCTGCAGGACAGCACTGCACTAACAATGCCAATTCCTCTGAACCAAATTATACAACACCTCAAACACTCTTATCTGGGCCATTGGGAAACcaacactaaaacacaaaacaatctcGAGTGCTATCGGACCCTCAGTCGAAACTACAGCCTGACAGAATACCTGGTGACtgtcagaaacacaaagcacaggCAGATCCTGACCAAATACCGGCTCAGTGGCCACAGCCTGGCCACAGAGACaggccgacacaggcagagctggctggcCAGGAAGAACAGGATctgtggtcactgtgagacaAGAGAGgtagagacagagatgcactttctCCTGACCTGTAAAAAATACTCCCAAACACGggagaattgtataaataaaatcagtctCTCCATCTCACAATTCCcacaaatgacaaacacagaAGCACTGTCAGTCGTGCTGGGAGAACTGGCCTGGCTGGGAGTGGCTGGGAGTGGCCTTCAAAAGCTGATCCAGGCTGTCTCTGCACCCTGTACAGAACTCCGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57101 lncRNA downstream 94486 38097989 ~ 38098548 (-) True G45813
TU57093 lncRNA downstream 119556 38073088 ~ 38073478 (-) True G45806
TU57073 lncRNA downstream 139344 38044173 ~ 38053690 (-) True G45793
TU57068 lncRNA downstream 158706 38034030 ~ 38034328 (-) True G45789
TU57067 lncRNA downstream 161840 38030990 ~ 38031194 (-) True G45788
TU57229 lncRNA upstream 122615 38353906 ~ 38415203 (-) False AMCG00013641
TU57242 lncRNA upstream 124383 38355674 ~ 38357395 (-) True G45930
TU57246 lncRNA upstream 166644 38397935 ~ 38398998 (-) True G45933
TU57290 lncRNA upstream 225965 38457256 ~ 38458799 (-) True G45971
TU57343 lncRNA upstream 271051 38502342 ~ 38551147 (-) True G46003
AMCG00013637 mRNA downstream 20178 38169742 ~ 38172856 (-) True AMCG00013637
AMCG00013636 mRNA downstream 24473 38163238 ~ 38168561 (-) True AMCG00013636
AMCG00013634 mRNA downstream 30198 38157021 ~ 38162836 (-) True AMCG00013634
AMCG00013632 mRNA downstream 39391 38141990 ~ 38153643 (-) True AMCG00013632
AMCG00013635 mRNA downstream 53609 38129615 ~ 38139425 (-) True AMCG00013635
AMCG00013644 mRNA upstream 20856 38252147 ~ 38317400 (-) True AMCG00013644
AMCG00013645 mRNA upstream 98939 38330230 ~ 38337208 (-) True AMCG00013645
AMCG00013641 mRNA upstream 122559 38353850 ~ 38359048 (-) True AMCG00013641
AMCG00013643 mRNA upstream 128866 38360157 ~ 38374489 (-) True AMCG00013643
AMCG00013642 mRNA upstream 147509 38378800 ~ 38381792 (-) True AMCG00013642
TU57071 other downstream 149066 38043736 ~ 38043968 (-) True G45792
TU57069 other downstream 157367 38035310 ~ 38035667 (-) True G45790
TU57037 other downstream 180818 38010098 ~ 38012216 (-) True G45764
TU56849 other downstream 654724 37488729 ~ 37538310 (-) True G45617
TU56844 other downstream 709426 37482916 ~ 37483608 (-) True G45614
TU57222 other upstream 13530 38244821 ~ 38249591 (-) True G45917
TU57286 other upstream 216976 38448267 ~ 38451347 (-) False AMCG00013650
TU57301 other upstream 247261 38478552 ~ 38483756 (-) False AMCG00013661
TU57307 other upstream 247261 38478552 ~ 38483756 (-) True AMCG00013661
TU57455 other upstream 466104 38697395 ~ 38701074 (-) True AMCG00013677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2366994 True 838 lncRNA 0.41 2 NC_048591.1 28409065 ~ 28411178 (+)