RNA id: AMCG00013637


Basic Information

Item Value
RNA id AMCG00013637
length 741
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00013637
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 38169742 ~ 38172856 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGCAAAGACCACGACTTGCGCGTTTGTGGGGAGATGGTGACGGTAGTTTGTCAGCGTGTGCGACTCGTAGAAGAGGAGGGGTCACCTGATACAATAAACATGGCGGCGGCCACACAGTGGAGGTCAGGGGGGCGTGTGTGGTGGTGTCTATCCGTTGCCCGGAGATGCTTTAGCTCCTCCGCCGGCCCCACGCggacccccccctctctcccaggCAGGGCTCTCTTCTTCCTGTGTCAGCGTTTCTACGACGTTGAGCAATTGGTGAGCTGGAGCTCCGCCCTCAAAGCCTGGAGACTGAGGAAGAAGAACAGttacTATGGGTATACTCAGAAGCTCTATGGAGACAATGTGGCAGCTGCCTTCTACATCCTCAGTATTGGGGGAGCAGTCAGGTTTGCAGGTCAGAGTGAGTGGTTCAGGAGTGACCGCAGGGGCCGGTTCAGCTGGGACTTCCTCTCGCTGCGGGACGTCCCCCTTGAAGAGGTGGACGCCAGTGGCACCCTAATCAACCACACAGGACTGGACAACCTGGGTGAGAGGGAGGtGACTCAGTCCAGGCTACGCTCTTTGTGTCTGCGGGGCTGTCCGGCGGTGGATGGCTGGTTCGTGTCTCGGCTGCATGTCTTCTCTGACTCTCTTGAGGAGCTGTGTCTGTCCAACTGCCCCCGGCTCTCTGAGGGGGGGCTACTGCCTCTCACACAGCTCCGGTACAGAACCCTCGCCCCACTGCACTGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57101 lncRNA downstream 71194 38097989 ~ 38098548 (-) True G45813
TU57093 lncRNA downstream 96264 38073088 ~ 38073478 (-) True G45806
TU57073 lncRNA downstream 116052 38044173 ~ 38053690 (-) True G45793
TU57068 lncRNA downstream 135414 38034030 ~ 38034328 (-) True G45789
TU57067 lncRNA downstream 138548 38030990 ~ 38031194 (-) True G45788
TU57215 lncRNA upstream 53329 38226185 ~ 38227187 (-) True G45912
TU57229 lncRNA upstream 181050 38353906 ~ 38415203 (-) False AMCG00013641
TU57242 lncRNA upstream 182818 38355674 ~ 38357395 (-) True G45930
TU57246 lncRNA upstream 225079 38397935 ~ 38398998 (-) True G45933
TU57290 lncRNA upstream 284400 38457256 ~ 38458799 (-) True G45971
AMCG00013636 mRNA downstream 1181 38163238 ~ 38168561 (-) True AMCG00013636
AMCG00013634 mRNA downstream 6906 38157021 ~ 38162836 (-) True AMCG00013634
AMCG00013632 mRNA downstream 16099 38141990 ~ 38153643 (-) True AMCG00013632
AMCG00013635 mRNA downstream 30317 38129615 ~ 38139425 (-) True AMCG00013635
AMCG00013633 mRNA downstream 64967 38094496 ~ 38104775 (-) True AMCG00013633
AMCG00013639 mRNA upstream 26855 38199711 ~ 38213454 (-) True AMCG00013639
AMCG00013644 mRNA upstream 79291 38252147 ~ 38317400 (-) True AMCG00013644
AMCG00013645 mRNA upstream 157374 38330230 ~ 38337208 (-) True AMCG00013645
AMCG00013641 mRNA upstream 180994 38353850 ~ 38359048 (-) True AMCG00013641
AMCG00013643 mRNA upstream 187301 38360157 ~ 38374489 (-) True AMCG00013643
TU57071 other downstream 125774 38043736 ~ 38043968 (-) True G45792
TU57069 other downstream 134075 38035310 ~ 38035667 (-) True G45790
TU57037 other downstream 157526 38010098 ~ 38012216 (-) True G45764
TU56849 other downstream 631432 37488729 ~ 37538310 (-) True G45617
TU56844 other downstream 686134 37482916 ~ 37483608 (-) True G45614
TU57209 other upstream 20178 38193034 ~ 38231291 (-) True G45906
TU57222 other upstream 71965 38244821 ~ 38249591 (-) True G45917
TU57286 other upstream 275411 38448267 ~ 38451347 (-) False AMCG00013650
TU57301 other upstream 305696 38478552 ~ 38483756 (-) False AMCG00013661
TU57307 other upstream 305696 38478552 ~ 38483756 (-) True AMCG00013661

Expression Profile