AMCG00013771 (nudt3,LOC106566013)


Basic Information

Item Value
gene id AMCG00013771
gene name nudt3,LOC106566013
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 42477671 ~ 42487364 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013771
GCCGGAGATGCGCTGGGGTTTGAGAAAATGAAGCGGAGGAGAAGTTGTTTCTATTAATAAAAAGCCGGGGTTTCCTTCAGCGGGCTGTACGTCGAAAAGAGCGGCGTTTCCAAGAGGTTCGGGTTCAAGTTTCGGTCTCTGGAGCCCCGATATGATGAAGCTCAAGTCGAACCAGACCCGGACCTACGACGGCGATGGCTACAAGAAGCGGGCCGCCTGCCTGTGCTTCAGGAGCGAGAGCGAAGAGGAGGTGTTGTTAGTGAGTAGCAGCCGCCATCCAGATAAGTGGATTGTTCCTGGAGGTGGGATGGAGCCGGAAGAGGAGCCCAACGTAGCTGCCGTGCGGGAGGTGTGCGAGGAGGCTGGTGTCAAAGGGACGTTGGGGCGATTAGTAGGAATTTTTGAGAACCGTGACAGGAAACACAGAACGTACGTCTATGTTCTAATAGTAACAGAAGTCCTTGAAGACTGGGAGGACTCTGTAAATATTGGGagaaaaagggaatggtttaaAATAGACGATGCCATAAAAGTGCTGCAGTGTCACAAGCCCGTGCAGGCCTCCTACTTCGAAGCTCTCCAGCAGGGCTGCCTGACCAGTAACGGGACACCGCTGGTGGCCACGATAGCCGGAGACCTCTCCCCCACCTATAACATCAACCAGAGCTCGGTCTCTGGGATCAGATAACTAACACACAATGCAGCGACTCCTGGATCTGTcaactctttctctctgtcattctctctctcgctgtctctctctttctttttcttttttttttttttttttttttaaacaaacaaaaaaacggtTTGCCTTGCCAGCCTCATGTGCCAGTA

Function

symbol description
nudt3 Enables magnesium ion binding activity and pyrophosphatase activity. Involved in RNA decapping and diphosphoinositol polyphosphate catabolic process. Located in cytosol.

NR:

description
PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013771 True 840 mRNA 0.51 5 42477671 42487364

Neighbor

gene id symbol gene type direction distance location
AMCG00013761 NA coding upstream 690277 41764744 ~ 41787394 (+)
AMCG00013759 NA coding upstream 840446 41621764 ~ 41637225 (+)
AMCG00013755 NA coding upstream 872728 41594817 ~ 41604943 (+)
AMCG00013756 NA coding upstream 889732 41573978 ~ 41587939 (+)
AMCG00013760 NA coding upstream 925101 41549426 ~ 41552570 (+)
AMCG00013774 pacsin1b coding downstream 68444 42555808 ~ 42569579 (+)
AMCG00013776 uhrf1bp1,LOC102796170 coding downstream 177918 42665282 ~ 42689203 (+)
AMCG00013780 anks1a,LOC107746333 coding downstream 231329 42718693 ~ 42723943 (+)
AMCG00013782 anks1a coding downstream 246181 42733545 ~ 42738221 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding downstream 298063 42785427 ~ 42814143 (+)
G46652 NA non-coding upstream 584497 41845308 ~ 41893174 (+)
G46538 NA non-coding upstream 1064071 41413360 ~ 41413600 (+)
G46508 NA non-coding upstream 1273522 41203064 ~ 41204149 (+)
G46455 NA non-coding upstream 1592042 40882849 ~ 40885629 (+)
G46360 NA non-coding upstream 2052164 40416632 ~ 40425507 (+)
G46701 NA non-coding downstream 8382 42495746 ~ 42499599 (+)
G46730 NA non-coding downstream 204842 42692206 ~ 42692546 (+)
G46734 NA non-coding downstream 206298 42693662 ~ 42695623 (+)
G46739 NA non-coding downstream 216292 42703656 ~ 42792219 (+)
G46798 NA non-coding downstream 490248 42977612 ~ 42980239 (+)
AMCG00013770 NA other upstream 31191 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2087730 40377732 ~ 40389941 (+)
G46345 NA other upstream 2103871 40350652 ~ 40373800 (+)
G46244 NA other upstream 2915371 39561973 ~ 39562300 (+)
AMCG00013681 NA other upstream 3655717 38811945 ~ 38821954 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other downstream 157623 42644987 ~ 42648754 (+)
AMCG00013777 NA other downstream 162826 42650190 ~ 42661844 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other downstream 552620 43039984 ~ 43044436 (+)
G46862 NA other downstream 599925 43087289 ~ 43089643 (+)
G46945 NA other downstream 951128 43438492 ~ 43440698 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_16528243_16536012 NUDT3, NUDT3A, NUDT3B coding CI01000340 null 16528243 ~ 16536296 (+)