G46840 (LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838)


Basic Information

Item Value
gene id G46840
gene name LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43039984 ~ 43044436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU58393
ACAGCAGGCTCCAGGTCCACAAACACAGCGCGGGGCACATGCTTGCCCGAGCCAGTCTCACTGAAGAAAGTGTTAAAGGAGTCATCCCCGCCACCAATGGTCTTGTCGCTCGGCATATTGCCATTGGGCTGGATGCCATGCTCCAGACAGTACagctcccagcatgcattgccAATCTGTACTCCTGCCTGGCCCACATGGATGGAGATGCACTCACgctacacaagcacacacaatgcagaggatagggggagagagacagggaaaaaagaaaaagacaaaacaaggcCATTAGACCAGGTCCTTACCCACCACCGTTGGCTCCAGGCAGAAGAGCTCCCAGCAGGCATTGCCAGTCTGAACCCCCGCCTGGCCCACATGGATGGAGATACACTCGCGCTGTAGGCCAACAACAACACCATCACAACATCCGCCTTGACAATGCCAAGCTGCGACGCACGGAGAAGACCAACGCACTCTGGTCACACTTGTTTCTAAAGAGCGCCACACAGGGCAGCGACAAGAAGTTACACAGTATTCTGAATCTGCAGCAGTTCGGTTAATTCTGGGAAAACCCAGCTCCAGTTCTGGGATGCCAATTTTTCTCAACAACATACCGACAACAGGTCAACAACACTTTCCTCTTTATTTACTATTAAACAGTTAAGGGATGCCCCACGAGGGGTTATTCCAAAACATCAGACAGAAAGTTGCTAAACAGGATATGGAGCAGGAAATGGTCTCCAGTCaccattttgtttcaattgGGTTATACTCAGGCATGGCCTTTTCACATCACTAAAATACAGAGGGccttaaaatttaaataaacaaggatTTGATCAATAACTACTATAAAatcttaaacaaataaaaataaatccagtaCTGTACATGGAATACAAGCCTAAAGGAAAGCAAAGAGTGTTTAGGAAGATTTAAAGACCCTCTATAAAAGTGATCTCCAGGAATGAATGCTCCAGAAGCACACCAAGAATGTCTGGAGTGAAATGCTTTGCAGCAACTACACCTGCCCCCGTCTATGGGGAAGAATGCAGTACAGTGGACAACTGCTATTCCTTATCACACAGGGCTGTAAAGTTGCTTACAGTTTACATCATGAAGTGCAGAAGACTTTGTGTGTCCACAAGGCAATAAAAACGTAAGCAAAGGGGACATCTGGCAAATCATTAGTGCCAGTCAGTAATATCTGTCAAACAATAACACCTACATAATCCCATAGTGGAAACCAGCTTTAAAAGGGGTTACGACCTCTCCAAGAATTAAACTTCTGATAGACAGGCAGCAGCGTTACCAAAATTTCATTTTGTATAGgcaagaaaagcagaaaagcagGGGACTCTTTCAGAAATGCTCAGCTTTGACCTGTACTTCTATTCAGCTTGTGGTTAGCCGTTTATGAGAGTTCATTAGCCCTTTACAATGCAGGACTCGTGCAGATTTCCAGCAGGAAACGATTACAGAAACAGCTATGCTGCAGAACAGCCTTCAGTCCTGGCACAACAATAGGCCCTCACAGAGAATCTCTCCGCCTGTATCCTCTACCTAGGAACTGTCATcctcacaaacaaaacatttagagATTTCCCTGCTCCAGAAGAGGAATATTCTCCCAGCAGGACCTCATGAAAAGGTCAATCAGCTGCTGGTTTGTGGAACCGTTTCAAGATTTTGCTTCTGGACATATTTCGGCCCCTGCCAGATAAAACTGAAGGAAATGAAGCAGCCAAAGAATTGGCCCCTCCTACAAATTCCACAAAGCGTAGGTGGGGAAGGGAAGAGGCACACCATTTTGAAAGTTACCTACCCTTGAAATATGGGAGGAATCTGAAAGCATTCCAAGAATAAGGAGTGGAACATAGCAACAAAATGTCCTGTCATCTTACGCCTTTACTGCACAATTGTTCCAAGGGAAAGGACTTTCACAATCTGGAAGTCAACATCAAGGTCACACAATACAACTGCCAAGAGATCTGTGAAGAAAGCAAAGGAGGGCGGCAAACATTGACCTTCACAATAGAGCACTTGCAGACTTCTGACCTCTACTGTGCAGCCACTGTTTGATAGGCAGAAGTCCAatgagagagtggggggggaggaggggacaaaaatatatacacacatgtaatGTATGCTTCTGGCATTGCAACATTTGTTCAAGGCAGTCACATCGTACTGTTCTTGCCTTCTGAATGGTTAATTAAGGGGACCAGCTCGGTCGAAGTTTCCTGTTCACCAACAAAGGCAATAGGGGGTTGGGAGTTGGAGAAGAGATTTCATGTCAACAAAACTGTGCCAAATAAAGCGTGCGAGGCGACAGTCCTTCTCTGGACTTTGTTAATCAGTTAACTTTGAATTGCAATTGAAgttaagatgtatttatatgcCAGAAGACATTTTGATCCAACTGCTGGTTCAAAGTTAACCGATTTTATGCTACAATAAAAATAGGTTTACAGGTTTAGGTTTTGTAGGGTTAGGGAAGGACATGTGGATACTAAACCAGAGCCCCTGCCTACTTACTACACCAGTGCAGCTATCCCACCTTTTCCAGATTTAAAATGGGCTTCCCTTTGGCAGTAATTGATTGACATGTACCAACTCCAGTTCGGCTTTTGTGATGGGCATCGTGACCACCAGGGCACACTGCCATGTGCTAACAGTGACACTCCTCATGTGACAGCTGACTGTGTAACAATTTGATAGACAGTAAAAACAATTCCTgctcagagtcctgacctcagaCCCATAGCTCACAGGGGAGTAAAAGAACCAATAGATTTGACTACATAATACATAGAAATTGTGTCATTCATTCGCTTAGGCTGTACATGCACTAGAAATCCGAATTGAACCCGGTTTAGAAACGAGAATTGATCAAAACGGCACGAAACCTGGTACTAAAACAGCAACTGCGACTGTACAGTACCAGTCCGGCTTCAGCACTGCGCAGGGGCGAGACGGGGATGCGGTGGCGCCGAAATTCAAAGACGACACAATTTCAGGAAAGAGCGAAGGTCCCGTTCTGGCgacgcagatttccgcagttctgcgcagatgtgCGGAATCCCggcgatcccattggcggagcagcgcagaactCCGCACATCTGCGCCACACGAACGCCACCTTAGATTCGGCAACGCGGCCGACGTGTTATTACTCGTCTATGAAAGAGGTGGAGCTGATCACTTCTGAAacttcctccccctccccctgtgCCATGTGTGTGGTCGACAGCCGCAAGTGTTACAACATGCCTGGTTTACTACCTGTCGGACATGTTACTAACTTTGAATGGCAGGACTGCGGGGATGGAGAGAGCAAGAACAAAACCAATCTGTCTCTGCAAACCACTGACGCAGCAGAACTGAACCAGCTAAACAGGTTGGCACCTCAGTATAGTCTCTAAAACTCAAATCCAGGTCCTCCCATAAGTGCTCCCAGTTCGATACAGGGGGAAACCCCTCCTTTGGACAAGTGGTCTGCAGAGGTCTGACGCCCGTGTGCGTAAACTGGCACGTCAATCAGGTGGTGTAAAGCGCTTACTCATCACAAAAGACACACATGTGGACTTCGCTCCAGCCTTTTAAACCCGTGCCTGTGGAAGTGGGGTATTAATCACGACAAAGGAATGTGCACAGGGCAATAATACAGAAGCGTGCAGCTGCTCCAAGGcctctgccccccacccccacgccACCCGAGACCAGGGGGCCCCTTCAATAGATTCCGCACATTCCCGCAACGGGGCGGACAGGCACCGCACTCTCCTGCCAGATGCATTGGGGATAAAAAGAGTCCGAGAGAAAggcattaaaaagaaagcatgTCCAAATGTGAGATCCACTCCCAGCTGCATATATGAGAGTCGTCACCGGATCCATGTTGTCTGCTTTGCACGGAATTCAGAACTTAGAACTTAGAACTTAGAACTCTAGAAGCTGCGCGCCAATTCGATAGAATAGTAACAGATCCATTCACGACGCCCGTTTATTACACGGTTACTACCGCGACAATGCGACGTTTCATTACGTccaaaaaacaatttaacattcaCCGTTTATACAGTAACATTTCAACTTTGGCGCCTTTTGCACTGTGGCGAATAACTACGCActggaagaaaataacaaaaaagtaacttaccattgtgtctttaaaagaacaaaagagTTAAACAAAGTGCTAGTGGTTTTCAGGTCTCTTTGAAAGAGGATTTACATGTAGGGTTTGGTTTTCCGGAGCTCCGTTGACTCTAGACGCGCTACGGGTCTCCGCCAACACAGCAATGCC

Function

NR:

description
PREDICTED: tubulin alpha chain, testis-specific-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58393 True 4318 TUCP 0.47 2 43039984 43044436

Neighbor

gene id symbol gene type direction distance location
AMCG00013787 NA coding upstream 93645 42937001 ~ 42946339 (+)
AMCG00013786 scube3,LOC106566910 coding upstream 103841 42893266 ~ 42936143 (+)
AMCG00013785 scube1,LOC107550129 coding upstream 173075 42842575 ~ 42866909 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding upstream 225841 42785427 ~ 42814143 (+)
AMCG00013782 anks1a coding upstream 301763 42733545 ~ 42738221 (+)
AMCG00013791 adipor1 coding downstream 20900 43065336 ~ 43069921 (+)
AMCG00013799 NA coding downstream 59698 43104134 ~ 43108636 (+)
AMCG00013803 NA coding downstream 234695 43279131 ~ 43282004 (+)
AMCG00013807 NA coding downstream 381519 43425955 ~ 43431338 (+)
AMCG00013811 NA coding downstream 426021 43470457 ~ 43487228 (+)
G46814 NA non-coding upstream 40849 42998739 ~ 42999135 (+)
G46798 NA non-coding upstream 59745 42977612 ~ 42980239 (+)
G46739 NA non-coding upstream 247765 42703656 ~ 42792219 (+)
G46734 NA non-coding upstream 344361 42693662 ~ 42695623 (+)
G46730 NA non-coding upstream 347438 42692206 ~ 42692546 (+)
G46861 NA non-coding downstream 41954 43086390 ~ 43086600 (+)
G46905 NA non-coding downstream 306417 43350853 ~ 43352415 (+)
G46940 NA non-coding downstream 387940 43432376 ~ 43452015 (+)
G46941 NA non-coding downstream 397061 43441497 ~ 43443296 (+)
G46949 NA non-coding downstream 418335 43462771 ~ 43464006 (+)
AMCG00013777 NA other upstream 378140 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 391230 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 593504 42428101 ~ 42446480 (+)
AMCG00013729 NA other upstream 2650043 40377732 ~ 40389941 (+)
G46345 NA other upstream 2666184 40350652 ~ 40373800 (+)
G46862 NA other downstream 42853 43087289 ~ 43089643 (+)
G46945 NA other downstream 394056 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1990336 45034772 ~ 45095669 (+)
G47206 NA other downstream 2282222 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2771936 45816372 ~ 45823228 (+)

Expression


Co-expression Network