AMCG00013799


Basic Information

Item Value
gene id AMCG00013799
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 43104134 ~ 43108636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013799
GTTGGAAGTCTCCTCCCTCTCCATTTGTCAAAACATTCCTGCTGGGAGAGGGAGTCGGGGTTTGAAAagtctcttctctctctccctcaaagCCAGCCAGCTCAGAGGACGGCAGCAGAAGCCACAGCTCCTCGCCACTGATTGCtgcttttcttccccctctGTCAGCAGCATGGCCGTGAGTCCTCTCTTCATCGTGTTCACGGCTCTGCTCGGCCTCACCTgtgcccagcagcagcaggcccTACTCGACTACTTGGAGAGGAGACTCACAGTTATAGAGGACCGCATCTCCCTGTGGCACGACCAGACCAACCGCTATGCCGGGGAGCTCAGGGAGTTCAAACAGCAGATTGTGAGTCTGATAGAGAACGCGGAGAAAGACCGGGAGACGCTGCGCACCGACATGGAGAACACTAACACGCGCGTGGACcgtctggagagagagatggactaCCTGGAGACTCAGAACCCTGCGCCGCCCTGCGTGGAGGTGGATGACAAGCTGGTGGAGCAGCAGGTCACCAAGgtgaaggagaaaaacaagaggAAATACGAGAAGCTCACAGACTGCAGGGACATGATCTCCAGCATCAAGGCCATGAAGATCCTCAAGAGGCTCGGAGGCCCCAAAGGCACCTGGACGAAAGACGTGGTGGCTGAGAACCAGAAGGTGTATGTCTTCAACGGCACGGGCCAAACAACGCTGTACGAGTTCAGCACAGGCAGGGAACTCGCCGCCTCGCCCGGCCTGTCCCGAGCCAAGCACATTAATCTGCCCTTCCCCTGGGGTGGCACGGGCCACACGGTGTACGACGGCCATGCTTACTACGTGAAGGAAGGCAACGAATTCCAAGTGATCAAGTTTGACCTGCAGAACGAAACAGTGGTGGACAGTGCTGTCTTCCCTGCTGAAGACCAAGTCCCCGTCTACGGGCTTTCTCCTGAAACCTACATCGACCTCTCGGCAGACGAGGAGGGGCTGTGGGCCATCTACGCCACCAAGGAAAATGAGAAGAACATCTGCCTGGCTAAGATGGATCCCAAGACGCTGGATATCGAGCAGATGTGGGACACGCCTTGCCCGAGGGAGAACGCGGAGGCTGCCTTCATCATCTGTGGCACGGTGTACGTGGTTTACAACACCAAGCTGCCCAGCCGCTCCCGTGTGCAGTGCGTGTACGACGTCAGTGACATGGTCACCAACGAGGACGCGCCTCTTGTGTATTTCCCCAAGCGCTATGGCTCCCACTCCAGCCTGAAGTACAACCCGCGCGAGAAGCAGATCTATGCCTGGGATGATGGCTATCAGATTCTCTACAAGCTAAACATGAAGAAGAAGCTGGAGGTGTGAGACCAACACTGGCGCTGTTGAGAAAACCCCAATCAATTATGACACCCACTTAATTAGTTAACCCCAGGACTCCCTTTCTCCTTTGAGTTGCAGTGTAGTAAAGACATCAGAGGCTGgtagatttagttttttgttatcAAGAGCGGACTAGATTTaaccaaaatatacataattttcactaaattaataatgtataatcatacattcattcattcattcacctTTGTAGCATCATCCATTTTTTTAGATGgccaatatatacatataacctGGGTGTTACTGTCTGGGACATATCTTCAGTCACTTGTTTAGTATATTTCAGATGCTCTGGGCAGATATTATGCACTAAATCATCATACAAGTTTTTAACCtcttgtatttcattaaacTTCACTGTAGGTTTTCTTAAGGGCAAATccataaaatgtacatgttgCATATTTCTTGTGATAAGAAATTGATTTTCTAAAAAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013799 True 1827 mRNA 0.51 4 43104134 43108636

Neighbor

gene id symbol gene type direction distance location
AMCG00013791 adipor1 coding upstream 34213 43065336 ~ 43069921 (+)
AMCG00013787 NA coding upstream 157795 42937001 ~ 42946339 (+)
AMCG00013786 scube3,LOC106566910 coding upstream 167991 42893266 ~ 42936143 (+)
AMCG00013785 scube1,LOC107550129 coding upstream 237225 42842575 ~ 42866909 (+)
AMCG00013783 anks1a,LOC102790859,LOC106572349 coding upstream 289991 42785427 ~ 42814143 (+)
AMCG00013803 NA coding downstream 170495 43279131 ~ 43282004 (+)
AMCG00013807 NA coding downstream 317319 43425955 ~ 43431338 (+)
AMCG00013811 NA coding downstream 361821 43470457 ~ 43487228 (+)
AMCG00013812 NA coding downstream 382150 43490786 ~ 43514457 (+)
AMCG00013815 NA coding downstream 485805 43594441 ~ 43607562 (+)
G46861 NA non-coding upstream 17534 43086390 ~ 43086600 (+)
G46814 NA non-coding upstream 104999 42998739 ~ 42999135 (+)
G46798 NA non-coding upstream 123895 42977612 ~ 42980239 (+)
G46739 NA non-coding upstream 311915 42703656 ~ 42792219 (+)
G46734 NA non-coding upstream 408511 42693662 ~ 42695623 (+)
G46905 NA non-coding downstream 242217 43350853 ~ 43352415 (+)
G46940 NA non-coding downstream 323740 43432376 ~ 43452015 (+)
G46941 NA non-coding downstream 332861 43441497 ~ 43443296 (+)
G46949 NA non-coding downstream 354135 43462771 ~ 43464006 (+)
G47032 NA non-coding downstream 592288 43700924 ~ 43712011 (+)
G46862 NA other upstream 14491 43087289 ~ 43089643 (+)
G46840 LOC107711852,LOC107679810,LOC107594520,LOC108425079,LOC108265838 other upstream 59698 43039984 ~ 43044436 (+)
AMCG00013777 NA other upstream 442290 42650190 ~ 42661844 (+)
G46723 cunh6orf106,zgc:101577,LOC107696455,LOC107579776,LOC107724532,LOC107595408 other upstream 455380 42644987 ~ 42648754 (+)
AMCG00013770 NA other upstream 657654 42428101 ~ 42446480 (+)
G46945 NA other downstream 329856 43438492 ~ 43440698 (+)
AMCG00013838 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108264952,LOC108438565,LOC102786421,LOC100700110 other downstream 1926136 45034772 ~ 45095669 (+)
G47206 NA other downstream 2218022 45326658 ~ 45360882 (+)
AMCG00013872 NA other downstream 2707736 45816372 ~ 45823228 (+)
G47398 NA other downstream 2826023 45934659 ~ 45941906 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02601172_02604783 OLFML3B, OLFML3 coding CI01000306 null 2601000 ~ 2604783 (-)