AMCG00013947 (slc41a1,LOC107698497,LOC106565625)


Basic Information

Item Value
gene id AMCG00013947
gene name slc41a1,LOC107698497,LOC106565625
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 47979589 ~ 48001071 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013947
CGGCAGCGCAGCGGCGTTCAGAGCGATGGACAGGGCCTGAGCTCACCCTGCATTTCCGCTGTACGCGCTTGTCTCGAATCCTTTTTAATTGCGTGTGGATGGCCGTGCTTTAGACGACCTCAGGAAGCGACTGAGGTGTCCGGTAGCTGTGGACGTCTGTGCAGCACTTTCTTCCACCCTGTTGCCAAAACGGTATAAATCTATAGTATTTCACGTAAGAGAGGCTTGCACGGTACCTGTCCGGGGCTCGGGTTTGCGCTGCGGAGGGGAAGGAGACTTGTTGCGACGTGCTGGGCAGCCCGGTGTGAGAGGCTTGTCTGCGGAGACGGAGAGAGATCTGTACCTAATCATCATTACTTACTCCTTACCTCTGAGTGATGCCCAGCGCGGCGGGCACTGACCCGGGACGTCCGGACCAGCGGCTGGGCGCCTCTCGCTGTCTACTGCGCACTTACACGGGCTGGATGTGCTGCCGTATCGCCCACTATAACCAGAATGAAGACGATGGCGGCGGTGCCTGTGTAACACAATCCAGTTCCTCAGACCTTTAAATAAACCCGCCGCCACACGTGTTGTAAGCCGATCCGAGCCGCCGCTCCGTGCAGGGGTGTCGGCCTGAGCGCCGCCCGGCAGTTGAGCCGAGTGATCCGCCAGCGCAGCGCCGCGCAGCAGCAGCTCCCGCCGGGCGCCGGCGCCTGTTTGGGTTTGGATGTCGCCGAAGCCCCCGCAGCGCCGGGTTTGATGGAGAGCCTCCACAGCGGCTGCCCCCACACACGCCGGCCCGCCAGGGCGTGTCTCCTGCCCCGGCCTTAGACATTATAGATCACAGATACTGGTCAGTGTTGAATGGGATAAACTGGGAAAACACAATCCGCTTTCCTTTGCTTGCAGCCTAGATCTGTTATAACTCGACATTTCCGAACCGAACCGTATGGCCCTCTGGTCCAAAGAACAAGACAAGCCGTCCGACATGTCCGGCAGCGCGGCAGAAGTGAAGAAAGAACCGGGCAGCGGCTCGGTGCACCCGGTCATCCCGACGTCGGCGCCGGCCGAGCCGCTGCGGGGCCCCGGCGACTGCGAGCTGGCCGAGGTGACGTCATTCCCGGACCGGGCCGGGCCGCAGCGGGCCGAGGTGACGTCATTCCCGGACCGGGCCGGGCCCGTGCTGGTTCCGGACTGCCGGGCCAACGCCAAGGGCCAGCGCGAGGAGGACGCGCTGCTGGAGAGCGCGAGCCAGAGCACCGAGAGCGACGACGCATGCGCGGACCCCAGCCCCGCGCCGCCCGCGCCGCTCAAAGAGACCTCCTTCTCCATCGGCCTGCAGGTGCTGTTCCCCTTCCTGCTGGCGGGATTCGGGACCGTGGCTGCCGGGATGGTCCTGGACATCGTGCAGCACTGGGTGGTGTTCAAGAAAGTGACCGAGGTGTTCATCTTGGTCCCCGCTCTCTTGGGGCTGAAGGGGAATCTGGAAATGACGTTGGCTTCCCGGCTGTCCACCGCAGCCAACATTGGGCAGATGGACTCGGCCAAGGAGATGTGGAAGATGATCGTGGGCAACTTGGCTCTGATTCAGGTCCAGGCCACGGTGGTGGGCTTCCTGGCGTCCCTCGCTGCAGTCATCTTCGGCTGGATCCCAGAGGGGCGGTTCAAGATCGGCCACGCGGTGCTGCTCTGTGCCAGCAGTGTGGCCACAGCCTTCATAGCCTCCCTGGTGCTGGGCCTGATCATGATCGGGGTGATCATCGGCTCCAGGAAGCTCGGCATCAACCCGGACAACGTGGCGACGCCCATCGCTGCCAGCCTGGGCGACCTCATCACCCTGGCACTGCTGTCAGGCATCAGCACGGCGCTGTATGGGCAGCTAGAGCATAATGACTACACCAACCCCCTGGTGTGTGCGTTCTTCGTGGCCCTGACACCGCTGTGGTTCGTGATAGCGCGCCGCAGCCCCTGCACCCGCGAGGTTCTGTACTCTGGCTGGGAGCCCGTCATCATCGCCATGGCCATCAGCAGTGTCGGGGGCCTGATCCTGGACAAGACTGTGTCCAACCCCAACTTCGCAGGCATGGCTGTCTTCACCCCCGTCATCAACGGTGTCGGGGGTAACCTGGTGGCGGTGCAGGCCAGCCGGATATCCACCTACCTGCACATGAGCAGCGTGCCGGGCCTGGAGCTCGGCCACACGCGGCACCGCTGCCCCACGCCCTGCAACACCTTCTTCGGATCCAGTGTGAACTCTCGCTCGTCGCGGGTGCTCTTCCTGCTGGTGGTGCCCGGCCACCTGGTCTTCCTCTATACCATCAACTCCATGCAGGCCGGACACACCACGCTCACCTCCATCTTTGTGGCCTTCTACATGACGGCCGCGCTGCTGCAGGTGCTCATCCTGCTGTACTTCGCAGACTGGATGGTTAACTggatgtggagcagagggatgAACCCTGATAACTTCTCCATCCCGTACCTGACTGCCCTGGGAGACCTGCTGGGAACCGGCTTCCTGGCGCTGAGCTTCCACGTCCTGTGGCTCATTGGGGACCGAGACGCTGACGTTGGTGACTAAGTGCCCCAGGCCGCCCagcctcccctcccccttcctCGCTACTACTGGGACTtgttatttattacaattattaattttagtgatttattattattttatgttttttcatgttttttttttgtgggatAAAATCAAttctcattatttttcaatggggattattttccattattgcCAGAGAAAATGGACACGTTTTGTAAAGGCGGAGACAAATTATTTGCGCAATGAAGAACAACTTAAATATATAGCCAAATACAATACAAGGATGGTCAACCACAAAGTGCTACATGTGCCGCAATCTAACACAACATAGTGACTTTGCTTGACCTGTGATGGAGGCCTCGTTAGTGTCTCTTACTTTAGCATGAACACCGTGATGGCAATGCAGAAATAATGGGAGCTTTAGACCAGAACTGACTGGCCTGAAAATCGCCTGCTAgccctgtctgtctatctgtctgtttcATACAAATCtccttatttatttctgaatagTGGGAAAGTGGGATTAAATTGTTTGCTATGCTATGCTCTGGGCCTGTCCGGCACTTTAGACCCCTGAAGGTTAACCAGGTCAATTTAAAGGTCTTAAAGGTCTAATTAGTGTCATTTCATTGACCTAGCAATTGACTGACAACTCGCAGTTTCTCCCCTCCATGTTGTGCAGTGAGGTTTGGTCCTATCGTTTGGGCATCAAATACAAAGATCCTGCTGTAGGAGGGGAATTTAAAAGGAGGAAATATCCACAAACCCAGTCCTGGGTAAATTAGAACATCTCACTGGGGAGTCCGGAGGGCGTCTCTAGTCCGGGGGGTGTCTTGAGACCAGGGGGCATCTAGAGTCTCGGCCCTTGAGTATGAAGGTAACAGTACAGATATAACCGGTCTCAAACACCCCCTGGGCTGCCGTGTCCCTGTCCTGGAGGAAAATGAACTGGCATTATCCTTAATCTCTCAGCAAAATGTGAATTCCTTTATTCTGGTAGTTTTTATGGTTATTGTTTATGGGACTCTCAATACTGTTGTCGCTGTGCACAGTGTGGGGGTGGGAGGCTGTGCTGGCCCTGATTATGTGATTGTAATGCTGCGGGGGTCTGAAATGCTGCCAACCGTCAGATGGTCTGTCTGGGACACTGAATGTCTGAACCCGTATTCCCCTGCCACAGTGATGCGCaagatgttttactgtgttttattttaatttaatcgcATTTTTATAATCTTTTCGTCAATCAACTTAAAGGACAGTTCAGCTCGGAAATTCCAGCCTATAATAGACTTCTCTAGCAAACTGTGAGAAAATAACGCATCGGGAAACTGCCCAAATTCTAGTGTGTCCTTTGAGACCCaatgataatatttattttaaaaatgaatctaaataaaataatacttatagAGATCATTATTTACCAAAGCTGCCATCTGTAGTTTAATTTCTTTGCCTGCGCTGCTGTCAAAGGAAGCCGGTGATACTTTCTGATCTTGAGTGAAATAGCTGTGCAATCATGTTGAATGCTGTATTCAAACACTTCGTCAGTCACTTTATTACGGTTGTGATACACAGACGCCGATGTACAACCAGAATGTAACTTCGACTTGAAGTCTCCAGATCCTTAACAATCGCCAAAACTCGCCAAGTCTCAGAAAAACCAACAAAGGTTGGGTGCGTACAGCACAGCTGGCGTAATCGATACCATCCTCGCTGGTTGTCCTCATACAGAGACATGTCTTCTGCATGGTTTGTGTGCCAAAGAGCAGGATTTAGGACCCTGGGAATGCCAGGTGTTCATAGTCTTCACCAGGAGAAAGGGGTGAGGCGTCCGTAGCTCTTTTACAACGTGTGACGCAGACTTTTCCGACTACTTGATTGTTATGCAATCCACGGCTGTGGAGGGAGACACGAATACATGGTGTGGGTCAtggttgttgttcttgttgttaaGTTGACCTTATATGACatctttcctgttattttcacGCTTGGGAGGAGTCGCTGTCAAGTGCGCCCCCTAGCGGTTAATAATCAAACATCTCACTTgtgaaatgtactgtaatgGTTCTTTATCTCAACACCAGCCGCGCCTCTCATTGGGCTCAGCGGAGACTCGGCTGTTCTGATGACACATCTGGCCGCGCTGTGTACACAACTCTTAAATGGTgccaattgtttttgtttgttgaaatcCAAATTTGAGTACGGCTCCCTGATTGTGAGTCTTACATTAAGGGGGGGCCAAagtaagtttattttttttctgtgtcttgttgcattttagattttgtttagttttattttctataactATCTCAAAACAAgttgtacataaatatatttattctacaagtgatatgtttaatttaaatgtattttgtgttatgcTCTTCCTTGCGTGTTTGTTTCTACATGTGCCACTCTGCACCCCAAGTTGTCTGCGGAAAATATCTTGTGTGTCAGTCGTGGATAAGGTTCTCCCATTACAACCTCCTGCGCAGCCAGTACTGAATGCAACCCAGATACAGAGTGCCTTAACAAGCCAGCACTGACGAGTACACCTGGACTTGACGAGCATATTTACATATCCACATCAATTCAAAATGGATGTCATCGTTTCTGAAGAATGTCTCGAGGGCCTTAATCACAAACGCCGTCTGACTGAATGTCTGACCAACCTGCCAGGAGATGAACGGCCACTCCTGTCTTCAGATAGGAAACGCAACGAGCGGGCGTCCAACACTTCACACGGAAGCTGGAGTGTCGGGCTTCAAACTTGTGCGACTGTGCTTGTTGACGTCAGCTTGGGAGCCAGTTGTggagaaaagaaacaaccaaaacagaaaagccCCTGAGGTTCACTGTGTCCGCCTGGGGCCAGAAACAATTAAGGACCcaaattagaaagaaagaaacacactgCCACTTTCCTGCTGTTATTTCTGTCTGTCATATTGTTAATTTCTGCTTTGAATGGTTCAGGGTTCGAGTCGCAACTCGGCTTGCTGGCATGGTggcctgcccccccacccatgCTCTTAATGTCTATACTGATCCTGAATTGCTCCCCTGTTGTACCTGTACATCCCTGGAATAAaggaatatattgttttttaa

Function

symbol description
slc41a1 Predicted to enable cation transmembrane transporter activity. Acts upstream of or within chordate embryonic development; magnesium ion homeostasis; and pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; corpuscles of Stannius; gill; liver; and pleuroperitoneal region. Orthologous to human SLC41A1 (solute carrier family 41 member 1).

NR:

description
PREDICTED: solute carrier family 41 member 1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K15122 SLC41A; solute carrier family 41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013947 True 5674 mRNA 0.52 11 47979589 48001071

Neighbor

gene id symbol gene type direction distance location
AMCG00013945 NA coding downstream 72423 47869425 ~ 47907166 (-)
AMCG00013944 NA coding downstream 122427 47849279 ~ 47857162 (-)
AMCG00013942 NA coding downstream 263594 47709213 ~ 47715995 (-)
AMCG00013940 LOC103386459,LOC108250956 coding downstream 355631 47583585 ~ 47623958 (-)
AMCG00013937 NA coding downstream 407814 47567103 ~ 47571775 (-)
AMCG00013949 NA coding upstream 4628 48005699 ~ 48014251 (-)
AMCG00013950 NA coding upstream 20993 48022064 ~ 48024332 (-)
AMCG00013948 NA coding upstream 30321 48031392 ~ 48048066 (-)
AMCG00013955 NA coding upstream 159603 48160674 ~ 48165662 (-)
AMCG00013954 NA coding upstream 172301 48173372 ~ 48176981 (-)
G47839 NA non-coding downstream 284695 47689845 ~ 47694894 (-)
G47809 lrrn2,LOC108425772 non-coding downstream 433998 47540563 ~ 47545591 (-)
G47807 NA non-coding downstream 483905 47495411 ~ 47495684 (-)
G47766 NA non-coding downstream 752335 47225801 ~ 47227254 (-)
G47717 NA non-coding downstream 904561 47071343 ~ 47075028 (-)
G47917 NA non-coding upstream 15490 48016561 ~ 48016838 (-)
G47991 NA non-coding upstream 178196 48179267 ~ 48179685 (-)
G47995 NA non-coding upstream 214804 48215875 ~ 48216209 (-)
G48021 NA non-coding upstream 268273 48269344 ~ 48270564 (-)
G48025 NA non-coding upstream 275665 48276736 ~ 48277321 (-)
G47896 NA other downstream 4674 47967425 ~ 47974915 (-)
AMCG00013946 golt1a,got1a,LOC106565310 other downstream 110726 47864850 ~ 47868863 (-)
AMCG00013932 ruxe,snrpe other downstream 778692 47188595 ~ 47200897 (-)
G47666 NA other downstream 1104219 46871869 ~ 46875370 (-)
AMCG00013903 NA other downstream 1668471 46299161 ~ 46311118 (-)
AMCG00013964 NA other upstream 364972 48366043 ~ 48375096 (-)
AMCG00013967 NA other upstream 454832 48455903 ~ 48479577 (-)
AMCG00013991 psma5,LOC107685984,LOC107736674 other upstream 816912 48817983 ~ 48821156 (-)
G48373 NA other upstream 1483429 49484500 ~ 49484767 (-)
G48392 LOC101077885,LOC107385168,LOC106516062 other upstream 1493656 49494727 ~ 49498630 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004289 slc41a1 coding NC_007122.7 CM002895.2 37948839 ~ 37997419 (-)