XLOC_004289 (slc41a1)


Basic Information

Item Value
gene id XLOC_004289
gene name slc41a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37948839 ~ 37997419 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008189
TATAGATGCGCAGGATCGAGCGCGTGTCAAATGGAACAATGTAACTGATCGGAGTTGACAGCCTCAGCCGAGAGGTTACTGATTAATCTGGCTCCATAACCATAGATAAGGGCACGACATCCGCCTGGATGACAGGAGAATGACAGCAGGTCCGCATTGAACATTTCACTGTCTTCTTCTCAAGGGAAATTAGCTTTGAATGGGGAACATAATTCAAGTGCTACCCAAGTTCAGGCAGGATCTTACACAAGCCTGGAGACGGGGAACGCACCTGCCTCTCTTCCTCGACCTGTAGACTCCTTCATCAGCAACAGCCGTCTTTAATGGGATAAATCTCCAGAGGTCAGGCTGATCTAAACTCAAGTAAGACCCTCAAGCTTGCTCATTTCTTCTTAATTGACACCTTTACATCCTAAGGCCTCCGCATGGTACTCTGGTTGAAAGATCAAGACAAACTGTCCGACATGTCCACCGGGACGGAAAGGATAGAGATGAAGAAGGAGGGGGTGCCGCCGGCGTACCACCACTCCAATGGGTCGGTCCATCCGGTTATACTACCAGACAGCCCAGAGGAGGTACCCCAGACCCCCGGGGAGTACGAACTCACAGAGGTGACCTCCTTACCGGACTGcggtgatcaggagaatgagcgTCCGGACATGGTGGTCCTCGACTGTCGGGCCAACGCGAAAGGCCAGAGGGAAGAGGACGCGCTTTTGGAGAACGCTAGCCAAAGCAATGAGAGTGATGACACTAGTACGGACCAAAGCCCGGTGCCGCCGGCTCCACTTAAGGAAACGTCCTTCTCTATTGGACTCCAGGTTTTGATCCCTTTCCTGCTGGCAGGGTTTGGGACGGTTGCTGCTGGCATGGTACTGGACATTGTTCAGCACTGGACAGTGTTCACAGAGGTGACTGAAGTCTTTATCCTTGTGCCTGCTCTCCTGGGCCTGAAAGGGAACTTGGAGATGACCCTTGCATCCAGACTGTCTACCGCGGCTAATATTGGACAAATGGACACAGCCAAGGATATGTGGAAAATGATCATGGGAAACCTCGCGCTAATTCAGGTTCAGGCCACCGTGGTCGGATTTCTGGCTTCCATCGCCGCCGTCATCTTTGGCTGGATCCCAGAGGGCAACTTTAGGATGGGTCATGCCATCCTGCTCTGTGCCAGCAGCGTGGCCACCGCATTCATCGCCTCTTTGGCTTTAGGTCTTATCATGATCGGGGTTATCATCGCATCCAGGAAGGTTGGCATAAACCCAGACAACGTGGCCACCCCTATTGCTGCCAGCCTGGGTGACCTGATCACGCTGTCGCTGCTGGCTGGCATCAGCACAGGCCTGTATAAGGAGCTTGAATTCAACAATTATGCCAACCCGATGGTTTGTGCCTTCTTCGTGGCTCTGACGCCCATCTGGGTCCTCATCGCCCGGCGGATTCCCTCCACCCGGGAAGTGCTGTACTCAGGCTGGGAGCCTGTCATCATCGCCATGGCCATCAGCAGTGTCGGAGGCCTCATTCTGGATAAGACCGTATCAAACCCCAACTTCGCAGGAATGGCCGTTTTCACTCCGGTCATTAACGGTGTGGGTGGTAATCTGGTGGCGGTTCAAGCCAGTCGTATCTCCACCTACCTGCACATGAACGCCCTGCCCATTGTAGAGCCAAACCCGGCCCCTCGCAAATGCCCTACTCCATGGGGCACCTTCTTTGGGTCTGGTGTGAATTCTCGATCTGCCAAAGTGCTGTTTCTGCTGGTCGCTCCTGGTCATCTGGTCTTCCTCTACACTATTAACTCTATGCGGGGAGGACACACCACTCTCACTTACATCTTCATTGCTTTTTACCTGGCTGCTGCTCTACTACAGGTCATTATCCTGCTGTATCTGGCAGACTGGATGGTGAACTGGATGTGGCGTCGAGGGATGGATCCTGACAACTTCTCCATCCCCTACTTGACGGCGCTGGGAGACCTGCTGGGGACAGGCTTCCTGGCTCTGTGTTTCCACATCCTGTGGCTAATTGGAGATCGGGACACAGATGTGGGTGATTGATCCACGCTGCCTTTTCCTCTGACTCTGACTGTccaagcaacacacacacatgacgtCTTTATTTATAATGCCACATAGAGAAATAATATCTGTATTGTTATGGCTACCACGGTTACCATGATTATATTGATGACATTATTTGCTTTAGTATCGATATATAATTTCGTTGTTGTTTAGCTACCGGGAGAACGACAATCCTCATTATTTTTCAATGGGGATGTTCGGCCCGATCTTACAGCCACTGGCTGCATGTAAAGATTACACCAACCTAAACTTGAAATACTTCACGAGAGGCAAGCGAACGTAGAATGCGTAATCACCAAGTGCTACAAAATGGTTTAATGATATAAAACTTACGGACTCAaaatatagacaaaaaaaaacatttccggACCATCATGTTATTCTTAGATAACATTTCAGCCTGTTGATTGGCTCACGTGGGTCCTAAACGGGACCGGTAAAATATACTCATACAGTAAACACTGTTTAGCGAACGCCTTGTTTAATTAACACTTTTCAGCATCTAAAATTGCTTTAGTAGCTCTGCTTGTGGTTACAGAGAGACACAGCAACCAAAAGTGCTTCATAGTTTCAATGCAATCCCTGGAACACTCAAGTTGTGCAATGCCATTCGTGGGTTGTTTACGGTCAACGCCGTAAGGATAAAACACCAGACTTTGCCTCAATTGCGTACATACATTTCAGTATCAAACTAATCAAAGGCCTGAAAGACTGTTGTAAGCTTTTCAGACCGCTATCGTAAAGTCCACATCCGTTAATCTCCCAAATCTCTGGACTCAAAAACACTGGGACGGTTCATGTAGATGTTATTTTCAAAGGATGGAAAAATGCATTTTGCTAATTTTATTGAACTGGAAATTATATTTGACGATGCAATTTTTAAAGTATTCTATTATATAGAGTATACATCTGCCTTATTTTGCAAtgcttaaatgctattttgcaatatttgggaaatatagCTAGAAGAATAaagaataatattattattataagtgtaAATTAAGGATTTAAAgagatagatcacccaaaaatgaatgttTACTCATCCTTAAATCCA
>TCONS_00008190
ATGGTACTCTGGTTGAAAGATCAAGACAAACTGTCCGACATGTCCACCGGGACGGAAAGGATAGAGATGAAGAAGGAGGGGGTGCCGCCGGCGTACCACCACTCCAATGGGTCGGTCCATCCGGTTATACTACCAGACAGCCCAGAGGAGGTACCCCAGACCCCCGGGGAGTACGAACTCACAGAGGTGACCTCCTTACCGGACTGcggtgatcaggagaatgagcgTCCGGACATGGTGGTCCTCGACTGTCGGGCCAACGCGAAAGGCCAGAGGGAAGAGGACGCGCTTTTGGAGAACGCTAGCCAAAGCAATGAGAGTGATGACACTAGTACGGACCAAAGCCCGGTGCCGCCGGCTCCACTTAAGGAAACGTCCTTCTCTATTGGACTCCAGGTTTTGATCCCTTTCCTGCTGGCAGGGTTTGGGACGGTTGCTGCTGGCATGGTACTGGACATTGTTCAGCACTGGACAGTGTTCACAGAGGTGACTGAAGTCTTTATCCTTGTGCCTGCTCTCCTGGGCCTGAAAGGGAACTTGGAGATGACCCTTGCATCCAGACTGTCTACCGCGGCTAATATTGGACAAATGGACACAGCCAAGGATATGTGGAAAATGATCATGGGAAACCTCGCGCTAATTCAGGTTCAGGCCACCGTGGTCGGATTTCTGGCTTCCATCGCCGCCGTCATCTTTGGCTGGATCCCAGAGGGCAACTTTAGGATGGGTCATGCCATCCTGCTCTGTGCCAGCAGCGTGGCCACCGCATTCATCGCCTCTTTGGCTTTAGGTCTTATCATGATCGGGGTTATCATCGCATCCAGGAAGGTTGGCATAAACCCAGACAACGTGGCCACCCCTATTGCTGCCAGCCTGGGTGACCTGATCACGCTGTCGCTGCTGGCTGGCATCAGCACAGGCCTGTATAAGGAGCTTGAATTCAACAATTATGCCAACCCGATGGTTTGTGCCTTCTTCGTGGCTCTGACGCCCATCTGGGTCCTCATCGCCCGGCGGATTCCCTCCACCCGGGAAGTGCTGTACTCAGGCTGGGAGCCTGTCATCATCGCCATGGCCATCAGCAGTGTCGGAGGCCTCATTCTGGATAAGACCGTATCAAACCCCAACTTCGCAGGAATGGCCGTTTTCACTCCGGTCATTAACGGTGTGGGTGGTAATCTGGTGGCGGTTCAAGCCAGTCGTATCTCCACCTACCTGCACATGAACGCCCTGCCCATTGTAGAGCCAAACCCGGCCCCTCGCAAATGCCCTACTCCATGGGGCACCTTCTTTGGGTCTGGTGTGAATTCTCGATCTGCCAAAGTGCTGTTTCTGCTGGTCGCTCCTGGTCATCTGGTCTTCCTCTACACTATTAACTCTATGCGGGGAGGACACACCACTCTCACTTACATCTTCATTGCTTTTTACCTGGCTGCTGCTCTACTACAGGTCATTATCCTGCTGTATCTGGCAGACTGGATGGTGAACTGGATGTGGCGTCGAGGGATGGATCCTGACAACTTCTCCATCCCCTACTTGACGGCGCTGGGAGACCTGCTGGGGACAGGCTTCCTGGCTCTGTGTTTCCACATCCTGTGGCTAATTGGAGATCGGGACACAGATGTGGGTGATTGA

Function

symbol description
slc41a1 Predicted to enable cation transmembrane transporter activity. Acts upstream of or within chordate embryonic development; magnesium ion homeostasis; and pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; corpuscles of Stannius; gill; liver; and pleuroperitoneal region. Orthologous to human SLC41A1 (solute carrier family 41 member 1).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0048793 pronephros development biological_process
GO:0010960 magnesium ion homeostasis biological_process
GO:0006812 cation transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4700 Predicted to enable cation transmembrane transporter activity. Acts upstream of or within chordate embryonic development; magnesium ion homeostasis; and pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; corpuscles of Stannius; gill; liver; and pleuroperitoneal region. Orthologous to human SLC41A1 (solute carrier family 41 member 1).

Ensembl:

ensembl_id ENSDARG00000070214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008189 False 3144 mRNA 0.48 11 37948839 37997419
TCONS_00008190 True 1635 mRNA 0.55 10 37949923 37995501

Neighbor

gene id symbol gene type direction distance location
XLOC_004288 etnk2 coding downstream 68347 37848705 ~ 37880492 (-)
XLOC_004287 NA coding downstream 121366 37780578 ~ 37827473 (-)
XLOC_004286 yod1 coding downstream 228573 37708384 ~ 37720266 (-)
XLOC_004285 zgc:158258 coding downstream 255820 37683278 ~ 37693019 (-)
XLOC_004284 NA coding downstream 334301 37613547 ~ 37614538 (-)
XLOC_004291 klhdc8a coding upstream 35696 38033115 ~ 38083473 (-)
XLOC_004292 AL928854.1 coding upstream 42545 38039964 ~ 38041422 (-)
XLOC_004293 NA coding upstream 87453 38084872 ~ 38087013 (-)
XLOC_004294 NA coding upstream 152470 38149889 ~ 38198887 (-)
XLOC_004295 NA coding upstream 342020 38339439 ~ 38425803 (-)
XLOC_004063 CR854846.1 misc downstream 21821161 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25257148 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25327072 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25357543 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25435577 12512966 ~ 12513262 (-)
XLOC_004283 NA non-coding downstream 344858 37593008 ~ 37603981 (-)
XLOC_004282 NA non-coding downstream 471871 37475513 ~ 37476968 (-)
XLOC_004279 CR352285.2 non-coding downstream 649354 37299371 ~ 37299485 (-)
XLOC_004305 AL845324.2 non-coding upstream 950568 38947987 ~ 38949751 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013947 slc41a1,LOC107698497,LOC106565625 coding CM030125.1 CM030125.1 47979589 ~ 48001071 (-)