RNA id: TCONS_00008189


Basic Information

Item Value
RNA id TCONS_00008189
length 3144
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_004289
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37948839 ~ 37997419 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAGATGCGCAGGATCGAGCGCGTGTCAAATGGAACAATGTAACTGATCGGAGTTGACAGCCTCAGCCGAGAGGTTACTGATTAATCTGGCTCCATAACCATAGATAAGGGCACGACATCCGCCTGGATGACAGGAGAATGACAGCAGGTCCGCATTGAACATTTCACTGTCTTCTTCTCAAGGGAAATTAGCTTTGAATGGGGAACATAATTCAAGTGCTACCCAAGTTCAGGCAGGATCTTACACAAGCCTGGAGACGGGGAACGCACCTGCCTCTCTTCCTCGACCTGTAGACTCCTTCATCAGCAACAGCCGTCTTTAATGGGATAAATCTCCAGAGGTCAGGCTGATCTAAACTCAAGTAAGACCCTCAAGCTTGCTCATTTCTTCTTAATTGACACCTTTACATCCTAAGGCCTCCGCATGGTACTCTGGTTGAAAGATCAAGACAAACTGTCCGACATGTCCACCGGGACGGAAAGGATAGAGATGAAGAAGGAGGGGGTGCCGCCGGCGTACCACCACTCCAATGGGTCGGTCCATCCGGTTATACTACCAGACAGCCCAGAGGAGGTACCCCAGACCCCCGGGGAGTACGAACTCACAGAGGTGACCTCCTTACCGGACTGcggtgatcaggagaatgagcgTCCGGACATGGTGGTCCTCGACTGTCGGGCCAACGCGAAAGGCCAGAGGGAAGAGGACGCGCTTTTGGAGAACGCTAGCCAAAGCAATGAGAGTGATGACACTAGTACGGACCAAAGCCCGGTGCCGCCGGCTCCACTTAAGGAAACGTCCTTCTCTATTGGACTCCAGGTTTTGATCCCTTTCCTGCTGGCAGGGTTTGGGACGGTTGCTGCTGGCATGGTACTGGACATTGTTCAGCACTGGACAGTGTTCACAGAGGTGACTGAAGTCTTTATCCTTGTGCCTGCTCTCCTGGGCCTGAAAGGGAACTTGGAGATGACCCTTGCATCCAGACTGTCTACCGCGGCTAATATTGGACAAATGGACACAGCCAAGGATATGTGGAAAATGATCATGGGAAACCTCGCGCTAATTCAGGTTCAGGCCACCGTGGTCGGATTTCTGGCTTCCATCGCCGCCGTCATCTTTGGCTGGATCCCAGAGGGCAACTTTAGGATGGGTCATGCCATCCTGCTCTGTGCCAGCAGCGTGGCCACCGCATTCATCGCCTCTTTGGCTTTAGGTCTTATCATGATCGGGGTTATCATCGCATCCAGGAAGGTTGGCATAAACCCAGACAACGTGGCCACCCCTATTGCTGCCAGCCTGGGTGACCTGATCACGCTGTCGCTGCTGGCTGGCATCAGCACAGGCCTGTATAAGGAGCTTGAATTCAACAATTATGCCAACCCGATGGTTTGTGCCTTCTTCGTGGCTCTGACGCCCATCTGGGTCCTCATCGCCCGGCGGATTCCCTCCACCCGGGAAGTGCTGTACTCAGGCTGGGAGCCTGTCATCATCGCCATGGCCATCAGCAGTGTCGGAGGCCTCATTCTGGATAAGACCGTATCAAACCCCAACTTCGCAGGAATGGCCGTTTTCACTCCGGTCATTAACGGTGTGGGTGGTAATCTGGTGGCGGTTCAAGCCAGTCGTATCTCCACCTACCTGCACATGAACGCCCTGCCCATTGTAGAGCCAAACCCGGCCCCTCGCAAATGCCCTACTCCATGGGGCACCTTCTTTGGGTCTGGTGTGAATTCTCGATCTGCCAAAGTGCTGTTTCTGCTGGTCGCTCCTGGTCATCTGGTCTTCCTCTACACTATTAACTCTATGCGGGGAGGACACACCACTCTCACTTACATCTTCATTGCTTTTTACCTGGCTGCTGCTCTACTACAGGTCATTATCCTGCTGTATCTGGCAGACTGGATGGTGAACTGGATGTGGCGTCGAGGGATGGATCCTGACAACTTCTCCATCCCCTACTTGACGGCGCTGGGAGACCTGCTGGGGACAGGCTTCCTGGCTCTGTGTTTCCACATCCTGTGGCTAATTGGAGATCGGGACACAGATGTGGGTGATTGATCCACGCTGCCTTTTCCTCTGACTCTGACTGTccaagcaacacacacacatgacgtCTTTATTTATAATGCCACATAGAGAAATAATATCTGTATTGTTATGGCTACCACGGTTACCATGATTATATTGATGACATTATTTGCTTTAGTATCGATATATAATTTCGTTGTTGTTTAGCTACCGGGAGAACGACAATCCTCATTATTTTTCAATGGGGATGTTCGGCCCGATCTTACAGCCACTGGCTGCATGTAAAGATTACACCAACCTAAACTTGAAATACTTCACGAGAGGCAAGCGAACGTAGAATGCGTAATCACCAAGTGCTACAAAATGGTTTAATGATATAAAACTTACGGACTCAaaatatagacaaaaaaaaacatttccggACCATCATGTTATTCTTAGATAACATTTCAGCCTGTTGATTGGCTCACGTGGGTCCTAAACGGGACCGGTAAAATATACTCATACAGTAAACACTGTTTAGCGAACGCCTTGTTTAATTAACACTTTTCAGCATCTAAAATTGCTTTAGTAGCTCTGCTTGTGGTTACAGAGAGACACAGCAACCAAAAGTGCTTCATAGTTTCAATGCAATCCCTGGAACACTCAAGTTGTGCAATGCCATTCGTGGGTTGTTTACGGTCAACGCCGTAAGGATAAAACACCAGACTTTGCCTCAATTGCGTACATACATTTCAGTATCAAACTAATCAAAGGCCTGAAAGACTGTTGTAAGCTTTTCAGACCGCTATCGTAAAGTCCACATCCGTTAATCTCCCAAATCTCTGGACTCAAAAACACTGGGACGGTTCATGTAGATGTTATTTTCAAAGGATGGAAAAATGCATTTTGCTAATTTTATTGAACTGGAAATTATATTTGACGATGCAATTTTTAAAGTATTCTATTATATAGAGTATACATCTGCCTTATTTTGCAAtgcttaaatgctattttgcaatatttgggaaatatagCTAGAAGAATAaagaataatattattattataagtgtaAATTAAGGATTTAAAgagatagatcacccaaaaatgaatgttTACTCATCCTTAAATCCA

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0048793 pronephros development biological_process
GO:0010960 magnesium ion homeostasis biological_process
GO:0006812 cation transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4700 Predicted to enable cation transmembrane transporter activity. Acts upstream of or within chordate embryonic development; magnesium ion homeostasis; and pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; corpuscles of Stannius; gill; liver; and pleuroperitoneal region. Orthologous to human SLC41A1 (solute carrier family 41 member 1).

Ensembl:

ensembl_id ENSDART00000102870

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008850 lncRNA downstream 121366 37780578 ~ 37827473 (-) False XLOC_004287
TCONS_00008851 lncRNA downstream 121366 37803780 ~ 37827473 (-) True XLOC_004287
TCONS_00008184 lncRNA downstream 256135 37687643 ~ 37692704 (-) True XLOC_004285
TCONS_00008488 lncRNA downstream 334301 37613547 ~ 37614538 (-) True XLOC_004284
TCONS_00008181 lncRNA downstream 344858 37601004 ~ 37603981 (-) True XLOC_004283
TCONS_00008192 lncRNA upstream 42545 38039964 ~ 38041422 (-) True XLOC_004292
TCONS_00008853 lncRNA upstream 87453 38084872 ~ 38087013 (-) True XLOC_004293
TCONS_00008855 lncRNA upstream 152470 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008854 lncRNA upstream 152470 38149889 ~ 38180391 (-) False XLOC_004294
TCONS_00008856 lncRNA upstream 152470 38149889 ~ 38190452 (-) False XLOC_004294
TCONS_00008188 mRNA downstream 68347 37848705 ~ 37880492 (-) True XLOC_004288
TCONS_00008187 mRNA downstream 228573 37717556 ~ 37720266 (-) True XLOC_004286
TCONS_00008186 mRNA downstream 228815 37708841 ~ 37720024 (-) False XLOC_004286
TCONS_00008185 mRNA downstream 231130 37708384 ~ 37717709 (-) False XLOC_004286
TCONS_00008182 mRNA downstream 255820 37683278 ~ 37693019 (-) False XLOC_004285
TCONS_00008191 mRNA upstream 35696 38033115 ~ 38083397 (-) False XLOC_004291
TCONS_00008193 mRNA upstream 53202 38050621 ~ 38083473 (-) True XLOC_004291
TCONS_00008195 mRNA upstream 473126 38470545 ~ 38492564 (-) False XLOC_004296
TCONS_00008197 mRNA upstream 482632 38480051 ~ 38492269 (-) True XLOC_004296
TCONS_00008198 mRNA upstream 507738 38505157 ~ 38513978 (-) False XLOC_004297
TCONS_00008174 other downstream 649354 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008119 other downstream 2723700 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008105 other downstream 3482326 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008102 other downstream 3593177 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 3982567 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008194 other upstream 177652 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 950568 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 1092456 39089875 ~ 39089991 (-) True XLOC_004308
TCONS_00008222 other upstream 2185262 40182681 ~ 40182796 (-) True XLOC_004319
TCONS_00008236 other upstream 2680794 40678213 ~ 40696136 (-) True XLOC_004327

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_09983479_10008765.mRNA True 3509 mRNA 0.45 10 CI01000306 9982593 ~ 10009753 (-)