XLOC_004292 (AL928854.1)


Basic Information

Item Value
gene id XLOC_004292
gene name AL928854.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38039964 ~ 38041422 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008192
gactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttggtcaatttgatttggaaaagcttgaaaatcaactaaaggagcagcctgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccgtgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatgtatatatatgtgtgtatgtgtgtgtgtgtatatatgtatggtatgtaggtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttaaaaataagtttgactttatacttctgcaattatatatatatatatatatatatatatatatatatatatatatgtatatgtatatgtgtatatatatatatatatatatatatatatatatatatatatatatgtgtatatgtatgtatgtgtatatatatatatatatatatatatttgtttgtttattattattttaatgttttattaaaaaatgtttcaagatgtttcttcagaattctgcagtacttttaacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttaggtttatataaaatttagctgtttgtacaaatttttaattcaagtctattgggaaaacagggttgttttaaaaacatctgtgtttgtgtgtaatttttagattttttgtttaaatctttctgtgtctttaatgtgttgttttattgttgtttttatattgatattcttgtgcactacaaaattatttataaaattttagtactatttttttcttgcaattaataaacgtttaacattta

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008192 True 1298 lncRNA 0.24 2 38039964 38041422

Neighbor

gene id symbol gene type direction distance location
XLOC_004289 slc41a1 coding downstream 42545 37948839 ~ 37997419 (-)
XLOC_004290 NA coding downstream 52406 37984951 ~ 37987558 (-)
XLOC_004288 etnk2 coding downstream 159472 37848705 ~ 37880492 (-)
XLOC_004287 NA coding downstream 212491 37780578 ~ 37827473 (-)
XLOC_004286 yod1 coding downstream 319698 37708384 ~ 37720266 (-)
XLOC_004293 NA coding upstream 43450 38084872 ~ 38087013 (-)
XLOC_004294 NA coding upstream 108467 38149889 ~ 38198887 (-)
XLOC_004295 NA coding upstream 298017 38339439 ~ 38425803 (-)
XLOC_004296 elk4 coding upstream 429123 38470545 ~ 38492564 (-)
XLOC_004297 si:ch211-117k10.3 coding upstream 463735 38505157 ~ 38513978 (-)
XLOC_004063 CR854846.1 misc downstream 21912286 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25348273 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25418197 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25448668 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25526702 12512966 ~ 12513262 (-)
XLOC_004284 NA non-coding downstream 425426 37613547 ~ 37614538 (-)
XLOC_004283 NA non-coding downstream 435983 37593008 ~ 37603981 (-)
XLOC_004282 NA non-coding downstream 562996 37475513 ~ 37476968 (-)
XLOC_004305 AL845324.2 non-coding upstream 906565 38947987 ~ 38949751 (-)
XLOC_004308 CU210919.2 non-coding upstream 1048453 39089875 ~ 39089991 (-)

Expression


Co-expression Network