XLOC_004297 (si:ch211-117k10.3)


Basic Information

Item Value
gene id XLOC_004297
gene name si:ch211-117k10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 38505157 ~ 38513978 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008198
TGCGATGCGTGTCATGTGACAGGCCTCGGTGAGAAATGCCAACATGGAACCGTGGCAAGGACGATGTTCTTCCCAACAATAACATTGAAAGGGACGCCTGGATTCATCCTATGTCGTGCATCCACAACCCGGACACTTTAATCAATATTCACACGAGTGTTTACAAACCGAGGCAATACTTCCGCCTTCTTCTGACCTGCGCACCAACCAATGGTCTCCATAAGCGACAAAGCGGTGGCCACTGCTAATGAATCGTTTGCGGACCATGCCTTGGCCACCCTGCCCTTCGCGGAGGTGTGCGGCAGTGAGAGCAGCGAGCGGGGCAGCTCCATCTCCTGCTCCAGCCCCGAAACCGGAGATGCTGGAGCTCGACTCTGCTTCAGCCCAGGGGAGGAAGATGAAGACGAAGGCCCTTTGCAGATCTTCCTAGACTCCGCAGAGGAGCTATTAACCCAGATACCCAAGCTGCCTGATTTTATACCCCAGCTGTCCAGCACCTTCTCCCCAACCCTGGAGGACATCGAGGAGTTTTTGATGGAGAAGATGGAGTTGCATGCTCCTCTGAGTCCGGAGGAGAAGTCAAAAGAGGATGACGCTACTGTACCGCCGTCTTCCCCTGGCGAATCTGAGGAGAAATCCAGCATGATGGCAACGTCTCAGACGACTCAAAGTGTTAACGCTACAGCTAGTGCCACATCGGTGCTCGTTGGTGCTCCATTTGTACTTCAGTTGCAACCTCTCCAGCTAAGCCACGCCCTCCCTCAGCCAGACAACCAATCGGGTGTGGCCGGTGGGCTCCGCGTGGCCCACCTGGTGCTCGGTGTCCAGGGGACACAGAACATTACGCTTCTTTCACCGCAGGTGCCGTCTGCAACTCTTCTGCCCATCATGGGCGAAGCTGTCAACCAAGACCAAAAGTATGTGAAGATCGCTCCGCTGCCTATTGCCGTCAGGGCGGTCGGAATCGCGGGCGCAGGCCTGGTCAAAGCCATCACTCCACGTCCATCCAGGTCCACAACGGAAACCTTGCGGGTACATAAATGCTCTCACCCAGGGTGTGAGAAGATGTACACTAAAAGCAGCCATCTGAAGGCCCACTTCCGCAGACACACAGGAGAGAAACCCTACCTGTGCAGCTGGCCGGACTGTGGCTGGAGGTTTTCTCGTTCTGATGAGCTGTCCCGTCATCGACGCTCTCACTCGGGAGTCAAGCCTTACGAGTGCACAATGTGCGACAAAAAGTTCGCCAGGAGCGACCACCTATCCAAACACACTAAAGTGCACCGGGGTCCCCGCGCCGGCAGACTGGTCAGAGCAAACGTCTGACTCCTCCCCCCCAGCCCCGGAAAAACCCACCGTGTGTGATTCCTGGAGTCTGAGAGGGAACGCTACGATATCTAAATGGGCTCACAAGCTGAAACCCTCCGCCTTCATTTACGTCTGTGTCCTTCCTTCTCTCcccctcttttttaaaatcgtttCTCCAGATGTTTGTTTCCCTTGGTGCTACAGTCAGCTAACTTGAATCTCAGGGATGTGATTGTTAAGCTCAAATGCAGATTTCTGGCTTTTCGGTGGGCTAAAGCAAAGGCGAGTTGCATGCGGCAGATTGCCTTCGATTGCCTTTAACCTGGTTTGCAGGTAGTCTAAATGGCAATATAAGCCGAGGATAATCCGTGTTTCTTGTATATTTTGTGAATATTGTGTTATAGATCTAAGCGGGTGAAGATATAAATAAGGAATCcagtatttgtttgtgttttggtttGGCTGTTGAGCATAAAATCCGAAGCCAGAATGCTGCAGAATTTCCCTTcccttttaaattaaaacaatatgcaCTATGATTTAGGCTATGGTGTTATGCAATATCAGGCATGGCCTCTATCTACGGGTGAATCTCAAGGAGAAATGTCAAGAAATGCAATATTTAGTCATGTTTACTGGaagtaaatgtattaaatatatgtaataagtccttattaaaatatgtttgacTTTACCATACATTTTTgacatgggtgtttcccagtactgggttgcggctggaagggcatctgctgcgtaaagccagaatagtaggtggttcattccactgtggtgacctttgaTAAACATTCACAGAACGACAAGCCGTAACATCATTAgacttttgatatttggttggttttgggTTAGAGTTCTGTCCCCTCGACGTTGGGATACGACTTCAATCTGAcagctattttgtttttttaacgcCATTTCGGTcgtcatacagtaaacatccatcatttttgaatccatgagcatctaaaccaggggtgtctaaacttaaTCCTGGAtagccgatgtcctgcagattttagctccaacttgattcaaagaaagcctagtaagagcttggttagctagcccaggtgtgtctgattggggttgaaactctaggactgagtttggacacccctgatttaaacacTCTCAAGTcagtgcgtgtaaagattttggtcTTCTTGCACACTTTAAATTCTTCCAAACAGTTCGCTGCAATAATGAATCACCCATATCCTGAGCTAGTTCAtcatgatgcgatttaccttttCACCTCTTTGTGCAGTTTGGCCAGAAATCCcatcatagacaagaaaaaaataaagtagtgaccgcaggatgaaggaaagtagtggagtaaaagtacagatactgcactaaaaatgtactcaaggcaaAGTAAAAGTCAGCATCTTTAAAACTAATTAATCACTAACAATTCTGAAGAAAAACTACTCACAGTATTACAGAGtacttgtaatttgttactttacaccactgcataaTATATGATTTGCTAATAAATTTGTATAATGCCAATATGTTGAATTTGTAAACTGTACAGTACAGCTAGAAGTATAAATCATGGTAGCATTAGTTTAAATTTGACAGATTTCTAATATCAGGACAAATtaaagatattatattatattaaattgcattatattatatgatattatattatattatattatattatattatattatattatattatattatattaattatattgtattaaattatatttattatattatattatattatattattcatttattttattttaagcttagtccctttatgaatcagGGATGCtgaagtggaatgaaccgcaaactaatgtagtatatgttttacacagaggatgcccttccagctgcaacccatcgccgggaattatataatattatattttattattttttatttattatgttgcaTTACATAAATGAGATGTTTttgcattaaaggggtagttcacccaagaatgaatcatttactcacccatccTTTGTTAAAAACCTTTCTCTGTTGTGTTGAACAGTAGCTTTTTAAGTGCATTTtagatatgtgcataaaaaagttGATTGAAAATACCAAGAtgcgcatcaattttgaaaacgtgcataaaaaacgtatgcgcatagctgagtaggataaactttttatttgataagaaaagatgcgcataaactacaatggaaacacttttaccttACAAagtccagtatgcgcattaaaaaagtcgtgagtttgttataagagatcatgtgaaggtaaaatgtgtgtgaatggacaaaccagcaagctgagcacattgtaaaccatctgaaatgttgttttggtcattctaaaacaccttaagcATTTCAGTTTTAGTGGTATTATATTAATTACTACCTCCAGAATAGTCAAGAGCATCTGTGGTCTGCGTTTCTCGCTTTCAAAATCCGCCATGCGTTCATTGCGTGTCGGCATTATCttaggcgcaagtcatttattaaataaagaaaagattcgcACAGCTTCTCCTGCCGcagcaaattacattttatatttgataATTGGCGCCAGTTAataaggaagtgacgattttgttttctttttttctcgttggatggaaacgctgctttattcacatcttttatgcgatattccagttttgcacaaagttaatttgcatatttaggaACATGGAAATTGGAAGCATAGCTATTAcatccattgacttctattgtatttttttctgatatgGATGACAATGGgtgcattcttctaaatatcttcttttgtgagaAGAGAAACTGAGATAGGTTTTGAAAAAATGATGGGatgttttaaaatttcatttttgggtgaactttccctttgaGGTAATAACAGTAAGGAGAGGAAATGAACACAACAATGCATAAAAGacgcacacacattttttatttgacatttcttTGTGAGATTCACCTTATAAAAGTACTTTAGCTCTTATACGCGAATTGTTACGTAATGCAGGATTAGCtcctgtgtgtatttgtgtttttattttgtacttcGAATGTTTAGTCTCCACCCCTTCCCCCTCGCGCAAATCCAATcgcatcaaaataaaaacatcaggAATTTTCTTGGCCCAATCACATCCCTGCGCCAGCTGAAAGGTATTTATGCATCAAGTTGCTTTCCACAGTTTAGTTTTTCTCGTGCCTCATCTCTCTCAGTCTGTTGAGAGCGTATGCCAAACCGGGATTTCGTCCGCGTACGGGCCCCAGTGGATAACATCACTACATGTATGGACGAATTTGATGtactgtaaaacatatataaGCTAGAAACAACTTTCTCTTCGATCTGTAATCACACAAAAGAGAATTGTTTCCTTTATGTCGTCGTAATGTGCTTTGCATTagatcaatgcatttttttctactTAGTGCCGTCACGGTTGATAAGCTAAATCGCTGAGGACAGCAGTTActgtttgcaaaaaaaacaacaaataaataaattaaaaaaaactggcaGCTGATCGTTTCCAGTTGAAATGAAGCTATCTGGACATCATGTTACCGATACGCCATTGAAGGCTGCAGCTCTGTCATCCATTGGACTGTGCTCGAGTTTCTTTTTGACCATGGATGGGAATTTCTTTGGCGTCATCTTGCCTTTTTTAAATGGGGTCTTAACTACGTTACGCATTTTCTTTCCTGCTCTACTTAGTAGCTATCATAATCCATCAGGTGCTCTACATACTTAGTATCCGGACTTCTCAGTCTTCAAAATGTTTGTAGCACTCTCGTAGGCCTCATCACTTTTAATATCACACCGAGAGCATCCTGATTGACAGTGTTTCCAATAGTACTACCATGTACTGCCTGTTTTAAGATACTGTTCTCTTTTATTTTTGAAGGGAGTTGTCTGTTAACGGGATTTAGAGCATTATTTTCCTTTCCAAGGGCTCATCCTTGATTTTTCTGCCACCACCTTCATCCCAATAAAAGcattaaattatttactttacCTACAA
>TCONS_00008199
TGTTTACAAACCGAGGCAATACTTCCGCCTTCTTCTGACCTGCGCACCAACCAATGGTCTCCATAAGCGACAAAGCGGTGGCCACTGCTAATGAATCGTTTGCGGACCATGCCTTGGCCACCCTGCCCTTCGCGGAGGTGTGCGGCAGTGAGAGCAGCGAGCGGGGCAGCTCCATCTCCTGCTCCAGCCCCGAAACCGGAGATGCTGGAGCTCGACTCTGCTTCAGCCCAGGGGAGGAAGATGAAGACGAAGGCCCTTTGCAGATCTTCCTAGACTCCGCAGAGGAGCTATTAACCCAGATACCCAAGCTGCCTGATTTTATACCCCAGCTGTCCAGCACCTTCTCCCCAACCCTGGAGGACATCGAGGAGTTTTTGATGGAGAAGATGGAGTTGCATGCTCCTCTGAGTCCGGAGGAGAAGTCAAAAGAGGATGACGCTACTGTACCGCCGTCTTCCCCTGGCGAATCTGAGGAGAAATCCAGCATGATGGCAACGTCTCAGACGACTCAAAGTGTTAACGCTACAGCTAGTGCCACATCGGTGCTCGTTGGTGCTCCATTTGTACTTCAGTTGCAACCTCTCCAGCTAAGCCACGCCCTCCCTCAGCCAGACAACCAATCGGGTGTGGCCGGTGGGCTCCGCGTGGCCCACCTGGTGCTCGGTGTCCAGGGGACACAGAACATTACGCTTCTTTCACCGCAGGTGCCGTCTGCAACTCTTCTGCCCATCATGGGCGAAGCTGTCAACCAAGACCAAAAGTATGTGAAGATCGCTCCGCTGCCTATTGCCGTCAGGGCGGTCGGAATCGCGGGCGCAGGCCTGGTCAAAGCCATCACTCCACGTCCATCCAGGTCCACAACGGAAACCTTGCGGGTACATAAATGCTCTCACCCAGGGTGTGAGAAGATGTACACTAAAAGCAGCCATCTGAAGGCCCACTTCCGCAGACACACAGGAGAGAAACCCTACCTGTGCAGCTGGCCGGACTGTGGCTGGAGGTTTTCTCGTTCTGATGAGCTGTCCCGTCATCGACGCTCTCACTCGGGAGTCAAGCCTTACGAGTGCACAATGTGCGACAAAAAGTTCGCCAGGAGCGACCACCTATCCAAACACACTAAAGTGCACCGGGGTCCCCGCGCCGGCAGACTGGTCAGAGCAAACGTCTGA

Function

symbol description
si:ch211-117k10.3 Predicted to enable metal ion binding activity. Orthologous to human KLF15 (Kruppel like factor 15).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-273 Predicted to enable metal ion binding activity. Orthologous to human KLF15 (Kruppel like factor 15).

Ensembl:

ensembl_id ENSDARG00000090914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008198 False 5340 mRNA 0.41 3 38505157 38513978
TCONS_00008199 True 1169 mRNA 0.57 2 38509171 38510469

Neighbor

gene id symbol gene type direction distance location
XLOC_004296 elk4 coding downstream 12593 38470545 ~ 38492564 (-)
XLOC_004295 NA coding downstream 79354 38339439 ~ 38425803 (-)
XLOC_004294 NA coding downstream 306270 38149889 ~ 38198887 (-)
XLOC_004293 NA coding downstream 418144 38084872 ~ 38087013 (-)
XLOC_004291 klhdc8a coding downstream 421684 38033115 ~ 38083473 (-)
XLOC_004298 slc45a3 coding upstream 3277 38517255 ~ 38533505 (-)
XLOC_004299 nucks1a coding upstream 26160 38540138 ~ 38554394 (-)
XLOC_004300 pimr127 coding upstream 379841 38893819 ~ 38899816 (-)
XLOC_004301 pimr126 coding upstream 394428 38908406 ~ 38910527 (-)
XLOC_004302 si:ch211-122l14.4 coding upstream 398155 38912133 ~ 38914265 (-)
XLOC_004063 CR854846.1 misc downstream 22377479 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25813466 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25883390 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25913861 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25991895 12512966 ~ 12513262 (-)
XLOC_004292 AL928854.1 non-coding downstream 463735 38039964 ~ 38041422 (-)
XLOC_004290 NA non-coding downstream 517599 37984951 ~ 37987558 (-)
XLOC_004305 AL845324.2 non-coding upstream 434009 38947987 ~ 38949751 (-)
XLOC_004308 CU210919.2 non-coding upstream 575897 39089875 ~ 39089991 (-)
XLOC_004311 NA non-coding upstream 694206 39208184 ~ 39212765 (-)
XLOC_004312 NA non-coding upstream 789619 39303597 ~ 39305163 (-)
XLOC_004313 CR847998.1 non-coding upstream 1123762 39637740 ~ 39645310 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_10274565_10279388 NA coding CI01000306 null 10273865 ~ 10279388 (-)