XLOC_004287


Basic Information

Item Value
gene id XLOC_004287
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37780578 ~ 37827473 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008850
ACCTTGGAGGGTATGATACTCGTTGCTCCTGTCTTCGGCTCTTCATCATGGCCTTGTACTCTCCCACCCGCAGTCGTCTACCCTCTACAATACAGGTGCGCTTTGGCCTTGGTTTGTATTTGTAATCTGGGTAACGTTCCAGGTGTTGCCGACTCAATCTGGCCTGCTCCTCATAGTACGGCTGCTTCTCCTGATTGGACATGGACTTCCACCGGGAACCTAAAGCAGGAGCAGACAGGCATAACATTAAGAACTGGAAAACATGCTGGCGAGTCCATAACACCGGAAGCTGAACTTCTGCATCAACTGTACTTCAAACTAAGGCAAAAGCACCTAGTGGAGTGTTGGGATGGGGCAGAAAGCAGCGCTCCATCGCTCAACATGAGGACCCAGACAGGAA
>TCONS_00008851
ACCTTGGAGGGTATGATACTCGTTGCTCCTGTCTTCGGCTCTTCATCATGGCCTTGTACTCTCCCACCCGCAGTCGTCTACCCTCTACAATACAGGTGCGCTTTGGCCTTGGTTTGTATTTGTAATCTGGGTAACGTTCCAGGTGTTGCCGACTCAATCTGGCCTGCTCCTCATAGTACGGCTGCTTCTCCTGATTGGACATGGACTTCCACCGGGAACCTAAAGCAGGAGCAGACAGGCATAACATTAAGAGTCATCTCTGTCGGAGGGCAGTCGAGCCGACCAATCGGAGAGCGGAGAGGACTGCTGGGATTCCCGATTGACTATTCGACCTCCCGACTCATCGTCTTCAAGCTTGATACCAACACCAACCATGGTCACATTGCCCTTGGCATGGGGATGTAAAGCAGGTGGACTGGGCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008850 False 400 lncRNA 0.51 2 37780578 37827473
TCONS_00008851 True 422 lncRNA 0.53 2 37803780 37827473

Neighbor

gene id symbol gene type direction distance location
XLOC_004286 yod1 coding downstream 60312 37708384 ~ 37720266 (-)
XLOC_004285 zgc:158258 coding downstream 87559 37683278 ~ 37693019 (-)
XLOC_004284 NA coding downstream 166040 37613547 ~ 37614538 (-)
XLOC_004283 NA coding downstream 176597 37593008 ~ 37603981 (-)
XLOC_004281 bsnb coding downstream 191285 37431693 ~ 37589293 (-)
XLOC_004288 etnk2 coding upstream 21232 37848705 ~ 37880492 (-)
XLOC_004289 slc41a1 coding upstream 121366 37948839 ~ 37997419 (-)
XLOC_004290 NA coding upstream 157478 37984951 ~ 37987558 (-)
XLOC_004291 klhdc8a coding upstream 205642 38033115 ~ 38083473 (-)
XLOC_004292 AL928854.1 coding upstream 212491 38039964 ~ 38041422 (-)
XLOC_004063 CR854846.1 misc downstream 21652900 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 25088887 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25158811 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25189282 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25267316 12512966 ~ 12513262 (-)
XLOC_004282 NA non-coding downstream 303610 37475513 ~ 37476968 (-)
XLOC_004279 CR352285.2 non-coding downstream 481093 37299371 ~ 37299485 (-)
XLOC_004278 CR352285.1 non-coding downstream 482481 37297501 ~ 37298097 (-)
XLOC_004293 NA non-coding upstream 257399 38084872 ~ 38087013 (-)
XLOC_004294 NA non-coding upstream 322416 38149889 ~ 38198887 (-)
XLOC_004295 NA non-coding upstream 511966 38339439 ~ 38425803 (-)

Expression


Co-expression Network