XLOC_004285 (zgc:158258)


Basic Information

Item Value
gene id XLOC_004285
gene name zgc:158258
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 37683278 ~ 37693019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008182
CGGGGATTAAACTAATGTTATTTTAAGAAACCCTTTAATAACGCGATTAACTAGGATTTCCTGTTGATCCTCCTGACACTTTCTGTCATCGTGTGTTTGTTAGTACAGACGTGTAAACATAAGTCGTTGCAGGTGTATACTTACTACTCTCAGCTCCGTTTCCCCTCAATTTAAACGGTAGTTTGATTTTGAGACGAACGTTTGTTTTATTCTCCACATTCACCGCGCCgttttctgattggctgctgcagCGAAGAAACGTAAATGATTGGTCGAAGATTCCCCTATTTACAGTCCTGGACTGCACACTGTAACACACGCAGAACTGACGCCGAGACTGTGGAAGCACGTGAACCTGCTGAGGTGCCATCTAATAACTCTTTCTGCCCTCAAGGaaatgcagtttcatcagcaCTGATAAAGAGCTTTGAATTCATATCAGGGTGGAGGTTTTCTTCATTTGCAATGCCGATAAGTGACATGCGGCAAGACGGCAATGGTCTCGACACAATGGGCGAGATTGACAGTAATGGCAGCTGTGATAGCGTGGTCAGCTTCAACTCATGCTTTAGTGATGAAAGTCTAGAGTATCTTTCCGCTGAGGAGAAGGCTTGTCTCATGTACCTAGAGGAGACTATTCAGTCATTGGATACAGAGGATGACAGTGGCTTGTCTAATGACGAATCCCTTCAGCTGCCAGCACGAGGAAATGTAGCTAACAAAGCAGCCCACATCTCTGCATCAATAAAACTCAACAAGCTCCCTAGTCAAGATATGCCCAAAAGCCGATCTGAAGGTCTATATTCATCTGGCAGCTTCGAGCAAAATTCTGAAATTCTGAATTATATGGTTCCTACGCCATTTGTCCTCGCAAACCATAATTCAAAACTCCAAACCAGAGCTGCGTCCCAGAAAAACACAGCATCCAAAGTGACATCTGAATCTATCCAGATCCACCAAGAAGCTCCACGAGTTCCCCCAGAGGTCAACGTTGTTGTGATACCACCTCCACGTAAAGCCAAAAGTAGTAAAGAAATTAAGAAGGAACAACAGAAAAATTTGCAGTCAGAGAACGTGGCGCATAGAGGACCGCTTTCCTATGAAGCTCTGGTGCAGCTGCGCAAGAGTGCGTCCATGAGGAAAACCAATGCAACTGAAGCTAATTAttccacaaaaaaagatattaatgGGAAAACCTCTGAATCCCAAACCATTTTCAAACCTGCTCCTCCACCGGTAGCTCCTAAACCTAAAAAGAAATTGAACCAAGAAGGAGCATCTGGAACCAATAAGGACTCCTCGATGGCTTATTCAGGAGAAAAATTAATGAATCCAGAGAAAGTAAGAGTGGAGGCTCTTTGCAAGTTGGGTCTTCTCAAGGAAGACGCAAAGATCTGCAAACAGCTAAAGCAATCTCAATCTAAACCAGCAAACCAGGCCTCAAGTGAACATCTTGCAAACAGTATCCCAGCAAGACCTGAAGAACAAATAAATCAGACAGTTCAAAGATCCAGTCCGCTCCACCAGAGGTCAGCGAGCGATCTTTTGACATCGTCTTCCCATGCACAACATGCCAATATGACTTCAACGGCAAAATCCGCCACTTTGGAACGCACTGGAATGGGACTGTCTGGATCAAACACCAATGCAGTTTCTCAGAGCCACAGGCCACGCTCTTCTACAATGGCAACCAATAAAGATACTCAAATGGATGCAAATGAATCGACACCCAGAAAACCCTTCAATATATTGTCGTCTCGTACAAAAGTTTTCAGCGTGCCGGTTCCCAGCATCGGAAAAGATCGGAGAGAGGCATTACGAAAACTAGGATTGTTGAAAAACTGAGATTTGTTCTCTACGGTTTTTTTTCCCCCAGGTCCGAATCAATGCTCCATTTAACAAGAATACTATCTTATCAGTCATTTATGAGCACTATATGTTTTACAACTTTCTTCCGAAGACAACAATAGCTTCAAAAGTAACCGTTGAGCCTACTGAGGCTTTGAAGTGGAGATAAAGGTTAGGATGTGATTTTTGCTTGCTGGGtttctatggaacaaaatcagtgccaaaagtattgaaataaaaagctgaattATACTGAATTAACAACTGAATTAACAactgcttgcattttaatgacttgaattgccaGGGTTTgaatttttaggtcctgaaactGAACACAGCTGTTTATTTTAGGGTTTAGAataccctggagtactttttattcattttaacagatttgtgtttgTTGAGAATTAGTTGAGACAGCGTTAGCACCTGTCAGGTttgattgtggggaaaactggataattttgagcttttgtcagctaatttcatcttccgggtttaatataatttttgggGGGGATCAAAAACTGTGACGTAGCGTGCATCTGCGAGTGGagtgatgatgcgtcggtttTCATTATTACACATCGTATCCCATGAGAAGAcactgcttcttaattattcatgagagcatgtgctttcagaAGGCAAGGCAGaactgccaagctgtgagacccaatgactgggtgagccCATGTCAGCACATGCcacgggtcgtatgtgtttgtttccatgatccacggggtttatTGCATGTTTTTCTTTGTGATTCTTTCAGGCCCAATACAgtaaagctgttggtttgcagcacaTATTTTTGTTGGGCGAGCTGTTCGAGAAATGGAAaatggtggactttgtcttttatcaattgagtttgttaccattcagacacattgcctatatccgtgctgctgtgttcaccatTTGCTTAAAATCTTCTAGAtacctcatttatagtgtttatataaacacgattatctatATGATGATACAAAAAATTGTtgttatgtgtatataaaattacgAATAATCTATCGTATATGTAGCAGGGGATTAAATTACGTGAAGTTTCCACAAACTAATATCCAGacgagcatgtgatatgattgatcacagctgatcTCTCATCTATAATCaatagttagccaatcagattaatccaaactcactataagtagcctggcTAAAACTACTGCCTTATCATCGTTTCTCGAAGaaacccccatccaccccatctcctcctgtaccagggggagctctcaagaactacCTAATCTCGTACttcccttacatgctcattgaccaggcgggaatCCTGGGCTCAATTATCACAAAGCTTAGGCTTCTCTTCCAGGCTTCTTTTCCAggcaaacctgctattattatcaagcaatatctaagtgcgaactcttgaataaccatttatttatttgcattttaactttgtaaactataaaatcatgcgtctcctcacggtttgtgtctcattttgctAGCCAACTGAAAGTTGTTCGCTCTTTTTCcccctgctctgccggccacgcccactcctccctccgctcgcagagctccacgcccattacgAAGCATTTTTTGAAAGAATTCGGAGGTAGACTTGAATCGAAAAAGGGGGGTTTAATGGCCCTTTAAATTgctccatctccacctgctggtaaAAAAAGCAGAGCTCTGGATATGGCGAGTCTGCAATCtgttgcttttcctgcagttttcggatgaaatgttgaattttaaaaGTCGAATTTAAAACCACCGAATTTATGGAAGCAAATttctaaaactgaaataaaatgagctgaaaattgccttttgaatattatacatggtattttcaaacacaactgaaTATTTTAGAGGTGAAATCTGGAAGTTGAATATGAAGTATTGAATTGAAGAATgtgttttgaattgaattattcacTGCTTAAATAAACACTagacactatggacaatttcaggacctaaaataCAAACCTTGGCAATTTAAGCCATTAAATTAAGTGTTAAGTGTAAGaattaagtgtatttttttttttagttagtgcTATTCGACAAGCTTTTTACTTCAATACTTTTGGCACCGATTTTGTTCCATAGGTTTCAATCACCTTGTTAATAGGCATTTTGAAAGTATTGCATATAACGCATAAAACACGTTCAAAAATACGTTTTTATGCTCGCTTGAGGTGGTTCGGACATGTGTTTTTTGGTTTTGTGGAAAGGGCTTAATGCAAATAGTTGGAGATGGAAACGCATTTGCAGAATAAACTTGTAGAGGACAT
>TCONS_00008183
ATGCGGCAAGACGGCAATGGTCTCGACACAATGGGCGAGATTGACAGTAATGGCAGCTGTGATAGCGTGGTCAGCTTCAACTCATGCTTTAGTGATGAAAGTCTAGAGTATCTTTCCGCTGAGGAGAAGGCTTGTCTCATGTACCTAGAGGAGACTATTCAGTCATTGGATACAGAGGATGACAGTGGCTTGTCTAATGACGAATCCCTTCAGCTGCCAGCACGAGGAAATGTAGCTAACAAAGCAGCCCACATCTCTGCATCAATAAAACTCAACAAGCTCCCTAGTCAAGATATGCCCAAAAGCCGATCTGAAGGTCTATATTCATCTGGCAGCTTCGAGCAAAATTCTGAAATTCTGAATTATATGGTTCCTACGCCATTTGTCCTCGCAAACCATAATTCAAAACTCCAAACCAGAGCTGCGTCCCAGAAAAACACAGCATCCAAAGTGACATCTGAATCTATCCAGATCCACCAAGAAGCTCCACGAGTTCCCCCAGAGGTCAACGTTGTTGTGATACCACCTCCACGTAAAGCCAAAAGTAGTAAAGAAATTAAGAAGGAACAACAGAAAAATTTGCAGTCAGAGAACGTGGCGCATAGAGGACCGCTTTCCTATGAAGCTCTGGTGCAGCTGCGCAAGAGTGCGTCCATGAGGAAAACCAATGCAACTGAAGCTAATTAttccacaaaaaaagatattaatgGGAAAACCTCTGAATCCCAAACCATTTTCAAACCTGCTCCTCCACCGGTAGCTCCTAAACCTAAAAAGAAATTGAACCAAGAAGGAGCATCTGGAACCAATAAGGACTCCTCGATGGCTTATTCAGGAGAAAAATTAATGAATCCAGAGAAAGTAAGAGTGGAGGCTCTTTGCAAGTTGGGTCTTCTCAAGGAAGACGCAAAGATCTGCAAACAGCTAAAGCAATCTCAATCTAAACCAGCAAACCAGGCCTCAAGTGAACATCTTGCAAACAGTATCCCAGCAAGACCTGAAGAACAAATAAATCAGACAGTTCAAAGATCCAGTCCGCTCCACCAGAGGTCAGCGAGCGATCTTTTGACATCGTCTTCCCATGCACAACATGCCAATATGACTTCAACGGCAAAATCCGCCACTTTGGAACGCACTGGAATGGGACTGTCTGGATCAAACACCAATGCAGTTTCTCAGAGCCACAGGCCACGCTCTTCTACAATGGCAACCAATAAAGATACTCAAATGGATGCAAATGAATCGACACCCAGAAAACCCTTCAATATATTGTCGTCTCGTACAAAAGTTTTCAGCGTGCCGGTTCCCAGCATCGGAAAAGATCGGAGAGAGGCATTACGAAAACTAGGATTGTTGAAAAACTGA
>TCONS_00008184
ACACGCAGAACTGACGCCGAGACTGTGGAAGCACGTGAACCTGCTGAGGTGCCATCTAATAACTCTTTCTGCCCTCAAGGaaatgcagtttcatcagcaCTGATAAAGAGCTTTGAATTCATATCAGGGTGGAGGTTTTCTTCATTTGCAATGCCGATAAGTGACATGCGGCAAGACGGCAATGGTCTCGACACAATGGGCGAGATTGACAGTAATGGCAGCTGTGATAGCGTGGTCAGCTTCAACTCATGCTTTAGTGATGAAAGTCTAGAGTATCTTTCCGCTGAGGAGAAGGCTTGTCTCATGTACCTAGAGGAGACTATTCAGTCATTGGATACAGAGGATGACAGTGGCTTGTCTAATGACGAATCCCTTCAGCTGCCAGCACGAGGAAATGTAGCTAACAAAGCAGCCCACATCTCTGCATCAATAAAACTCAACAAGCTCCCTAGTCAAGGTGTGCTGGAGCTCCTTTACTATTTCTAGCTCTTATCTATTGCTAATAGGTACGTAAATCCTAAGAGGTCATGCgttattatatttttcaagatcATGACTTAATGTTTTATCATTATCTCCTACAGACTGAACTGCTGCTGTAGGAAAACACTTGCGCTGCCTCTTCATTATAAACAATCATTAAGTTACATGCGAAAGATTCTGGCTGCTATCATACACCCTGCGCAATAAGACGCCAGACGTGTTTGGCACGATTTGTGGCTATTTTCAGACCATCGCAAACCTAACTTTCATGTTTGCACCAcactatttaaatagcaaatcaatttgCACCTCTttatggactcatgggtgtgctggtctaaaatagaggtgtgttgaggcgcattgttggtgcgttgctattttgaagaactgaaatagactgcgccattgaccgtCTAAAAGCAGGTCGAAAatcgttagttatgcacctacgTGGGCTCAACCCATAAgaacagcatgtgtatttggatataactcagttttttgaccacacttctttattattgtttatttattcgtttgctggaaattagaactgaatttagaaatagctttgaaacaaatctttgcgtttaacaaacgaaattaaatatgtaggctaatggatgtctttagtggacaACAACGTTTCCTTATTCATGAAAGGAAAGGAgtaaagagtgaaagtaaagaggctgaatgggggaggcttgttctttatccttgcgctgcagatggtctgtttaactgttttctcactagtgtagcgttttccacttacaaagtccaccatgtagatagcaaatgtgctatggcatgacgcaactgactcttaaatggAAATctgagatgagactgattggtttaatgcaggttatgcttaaaacacacccataattcattaagagcataagcacaacccttttagaccatgcgccgtggcgcagagtgtatttttccatgcttaaaacagcaaaagtggacTCGAACATGCTTTTAATGCTTCTGCGCCacgcgctttagactttgcgcctagatcgttaaaataaaaCCCTCTTTTTTAAAGGCAGGAACGTAGCCTACATCTGAAAATTTTTGGTAGCCGGTCATACATTGGGcaggtataaataaataataattaatgcataaatcaataaaaacaaaaaa

Function

symbol description
zgc:158258 Orthologous to human C1orf116 (chromosome 1 open reading frame 116).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2272 Orthologous to human C1orf116 (chromosome 1 open reading frame 116).

Ensembl:

ensembl_id ENSDARG00000070229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008182 False 4160 mRNA 0.41 4 37683278 37693019
TCONS_00008183 False 1365 mRNA 0.45 3 37685593 37691449
TCONS_00008184 True 1650 lncRNA 0.41 3 37687643 37692704

Neighbor

gene id symbol gene type direction distance location
XLOC_004284 NA coding downstream 68740 37613547 ~ 37614538 (-)
XLOC_004283 NA coding downstream 79297 37593008 ~ 37603981 (-)
XLOC_004281 bsnb coding downstream 93985 37431693 ~ 37589293 (-)
XLOC_004282 NA coding downstream 206310 37475513 ~ 37476968 (-)
XLOC_004280 erc2 coding downstream 257871 37310881 ~ 37425407 (-)
XLOC_004286 yod1 coding upstream 15365 37708384 ~ 37720266 (-)
XLOC_004287 NA coding upstream 87559 37780578 ~ 37827473 (-)
XLOC_004288 etnk2 coding upstream 155686 37848705 ~ 37880492 (-)
XLOC_004289 slc41a1 coding upstream 255820 37948839 ~ 37997419 (-)
XLOC_004290 NA coding upstream 291932 37984951 ~ 37987558 (-)
XLOC_004063 CR854846.1 misc downstream 21555600 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 24991587 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 25061511 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 25091982 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 25170016 12512966 ~ 12513262 (-)
XLOC_004279 CR352285.2 non-coding downstream 383793 37299371 ~ 37299485 (-)
XLOC_004278 CR352285.1 non-coding downstream 385181 37297501 ~ 37298097 (-)
XLOC_004292 AL928854.1 non-coding upstream 346945 38039964 ~ 38041422 (-)
XLOC_004293 NA non-coding upstream 391853 38084872 ~ 38087013 (-)
XLOC_004294 NA non-coding upstream 456870 38149889 ~ 38198887 (-)

Expression


Co-expression Network